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Mutant Information

Mutant Name	FN573-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN573-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2697507 C-A Hetero INTRON
SBS Chr1 9270514 C-T Homo INTERGENIC
SBS Chr1 22190791 G-T Hetero INTERGENIC
SBS Chr2 6435363 G-T Hetero INTERGENIC
SBS Chr3 14556067 G-C Hetero INTERGENIC
SBS Chr3 28634389 T-C Hetero INTERGENIC
SBS Chr4 4273220 C-T Hetero INTERGENIC
SBS Chr4 9427152 G-C Hetero INTERGENIC
SBS Chr4 11792136 A-G Hetero INTERGENIC
SBS Chr5 2178715 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g024600
SBS Chr5 10731208 T-A Hetero INTRON
SBS Chr5 15445136 C-T Hetero INTERGENIC
SBS Chr5 15957147 A-T Hetero INTERGENIC
SBS Chr6 2466160 C-T Hetero INTERGENIC
SBS Chr6 14735420 A-T Homo INTERGENIC
SBS Chr7 11515151 A-G Homo INTRON
SBS Chr7 19805712 A-T Homo INTERGENIC
SBS Chr7 19896007 G-A Homo INTERGENIC
SBS Chr8 24892356 G-A Hetero INTERGENIC
SBS Chr9 1374123 A-G Hetero INTERGENIC
SBS Chr9 1383788 C-G Hetero INTERGENIC
SBS Chr9 5316846 T-C Hetero INTERGENIC
SBS Chr9 14128910 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g095000
SBS Chr9 14128911 G-C Hetero SYNONYMOUS_CODING
SBS Chr10 9992430 C-T Homo INTERGENIC
SBS Chr11 7161687 C-G Homo INTERGENIC
SBS Chr11 7843544 G-A Homo START_GAINED
SBS Chr12 10047536 G-A Hetero UTR_5_PRIME
SBS Chr12 11728755 A-G Hetero INTERGENIC

Deletions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 8116001 8129000 12999 OsKitaake01g101408
Deletion Chr6 8517228 8517232 4 OsKitaake06g105800
Deletion Chr7 10820219 10820223 4
Deletion Chr4 18029991 18029994 3
Deletion Chr4 20396656 20396658 2
Deletion Chr1 29478500 29478504 4

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 13053394 13053399 4
Insertion Chr8 16521293 16521296 2
Insertion Chr8 21395200 21395203 2
Insertion Chr10 2987395 2987398 2
Insertion Chr11 8020800 8020804 3
Insertion Chr5 12532511 12532513 1

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 22167036 Chr9 20067980 OsKitaake12g174700
Translocation Chr7 28533807 Chr5 7555467
Translocation Chr7 28534604 Chr5 7555459

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2697507	C-A	Hetero	INTRON
SBS	Chr1	9270514	C-T	Homo	INTERGENIC
SBS	Chr1	22190791	G-T	Hetero	INTERGENIC
SBS	Chr2	6435363	G-T	Hetero	INTERGENIC
SBS	Chr3	14556067	G-C	Hetero	INTERGENIC
SBS	Chr3	28634389	T-C	Hetero	INTERGENIC
SBS	Chr4	4273220	C-T	Hetero	INTERGENIC
SBS	Chr4	9427152	G-C	Hetero	INTERGENIC
SBS	Chr4	11792136	A-G	Hetero	INTERGENIC
SBS	Chr5	2178715	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g024600
SBS	Chr5	10731208	T-A	Hetero	INTRON
SBS	Chr5	15445136	C-T	Hetero	INTERGENIC
SBS	Chr5	15957147	A-T	Hetero	INTERGENIC
SBS	Chr6	2466160	C-T	Hetero	INTERGENIC
SBS	Chr6	14735420	A-T	Homo	INTERGENIC
SBS	Chr7	11515151	A-G	Homo	INTRON
SBS	Chr7	19805712	A-T	Homo	INTERGENIC
SBS	Chr7	19896007	G-A	Homo	INTERGENIC
SBS	Chr8	24892356	G-A	Hetero	INTERGENIC
SBS	Chr9	1374123	A-G	Hetero	INTERGENIC
SBS	Chr9	1383788	C-G	Hetero	INTERGENIC
SBS	Chr9	5316846	T-C	Hetero	INTERGENIC
SBS	Chr9	14128910	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g095000
SBS	Chr9	14128911	G-C	Hetero	SYNONYMOUS_CODING
SBS	Chr10	9992430	C-T	Homo	INTERGENIC
SBS	Chr11	7161687	C-G	Homo	INTERGENIC
SBS	Chr11	7843544	G-A	Homo	START_GAINED
SBS	Chr12	10047536	G-A	Hetero	UTR_5_PRIME
SBS	Chr12	11728755	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	8116001	8129000	12999	OsKitaake01g101408
Deletion	Chr6	8517228	8517232	4	OsKitaake06g105800
Deletion	Chr7	10820219	10820223	4
Deletion	Chr4	18029991	18029994	3
Deletion	Chr4	20396656	20396658	2
Deletion	Chr1	29478500	29478504	4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	22167036	Chr9	20067980	OsKitaake12g174700
Translocation	Chr7	28533807	Chr5	7555467
Translocation	Chr7	28534604	Chr5	7555459

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes