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Mutant Information

Mutant Name	FN574-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN574-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 177848 C-T Hetero INTERGENIC
SBS Chr2 11821363 A-T Hetero INTRON
SBS Chr2 28806519 G-A Homo INTERGENIC
SBS Chr2 30029679 G-A Homo INTERGENIC
SBS Chr2 34316199 C-A Hetero INTRON
SBS Chr3 16760239 T-C Homo INTERGENIC
SBS Chr4 26122379 C-T Hetero INTERGENIC
SBS Chr5 645974 A-G Hetero INTRON
SBS Chr5 20117212 C-G Hetero INTERGENIC
SBS Chr6 12533270 G-A Homo NON_SYNONYMOUS_CODING OsKitaake06g133800
SBS Chr6 15510921 T-G Hetero INTERGENIC
SBS Chr6 27512227 G-A Homo INTERGENIC
SBS Chr7 6296687 T-C Hetero INTERGENIC
SBS Chr7 6296688 A-T Hetero INTERGENIC
SBS Chr7 14435707 C-T Homo INTERGENIC
SBS Chr7 22636388 A-G Hetero INTERGENIC
SBS Chr8 26003322 A-G Homo INTERGENIC
SBS Chr8 28253972 C-T Hetero INTRON
SBS Chr9 1756007 C-T Hetero SYNONYMOUS_CODING
SBS Chr9 14082650 C-T Hetero INTERGENIC
SBS Chr9 21656771 T-A Homo INTERGENIC
SBS Chr9 22158046 C-A Hetero INTRON
SBS Chr10 21431840 C-A Hetero INTERGENIC
SBS Chr10 21431841 G-A Hetero INTERGENIC
SBS Chr11 15777164 C-A Hetero INTERGENIC
SBS Chr11 16900711 A-G Hetero INTERGENIC
SBS Chr11 21477890 G-T Hetero INTERGENIC
SBS Chr11 25836513 C-T Hetero INTERGENIC
SBS Chr12 7651787 A-T Hetero INTERGENIC
SBS Chr12 7979056 A-T Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 2413747 2413758 11
Deletion Chr6 4028091 4028092 1
Deletion Chr5 4070946 4070947 1
Deletion Chr12 11218001 11237000 18999
Deletion Chr7 13596368 13596383 15
Deletion Chr9 16896304 16896306 2
Deletion Chr3 17538124 17538125 1
Deletion Chr6 21238345 21238355 10
Deletion Chr7 26012138 26012154 16
Deletion Chr7 26247323 26247333 10
Deletion Chr11 28766879 28766883 4
Deletion Chr2 30369489 30369491 2
Deletion Chr2 34677825 34677828 3

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 15273626 15273629 2
Insertion Chr3 4499896 4499899 2
Insertion Chr7 17400373 17400376 2
Insertion Chr11 5879372 5879375 2
Insertion Chr6 443 445 1

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 1292828 1364993
Inversion Chr10 1292871 1323859
Inversion Chr8 8790950 9028048 OsKitaake08g082500
Inversion Chr8 8790960 9028070 OsKitaake08g082500
Inversion Chr2 25606021 25816292 2
Inversion Chr2 25606025 25816299 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	177848	C-T	Hetero	INTERGENIC
SBS	Chr2	11821363	A-T	Hetero	INTRON
SBS	Chr2	28806519	G-A	Homo	INTERGENIC
SBS	Chr2	30029679	G-A	Homo	INTERGENIC
SBS	Chr2	34316199	C-A	Hetero	INTRON
SBS	Chr3	16760239	T-C	Homo	INTERGENIC
SBS	Chr4	26122379	C-T	Hetero	INTERGENIC
SBS	Chr5	645974	A-G	Hetero	INTRON
SBS	Chr5	20117212	C-G	Hetero	INTERGENIC
SBS	Chr6	12533270	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g133800
SBS	Chr6	15510921	T-G	Hetero	INTERGENIC
SBS	Chr6	27512227	G-A	Homo	INTERGENIC
SBS	Chr7	6296687	T-C	Hetero	INTERGENIC
SBS	Chr7	6296688	A-T	Hetero	INTERGENIC
SBS	Chr7	14435707	C-T	Homo	INTERGENIC
SBS	Chr7	22636388	A-G	Hetero	INTERGENIC
SBS	Chr8	26003322	A-G	Homo	INTERGENIC
SBS	Chr8	28253972	C-T	Hetero	INTRON
SBS	Chr9	1756007	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr9	14082650	C-T	Hetero	INTERGENIC
SBS	Chr9	21656771	T-A	Homo	INTERGENIC
SBS	Chr9	22158046	C-A	Hetero	INTRON
SBS	Chr10	21431840	C-A	Hetero	INTERGENIC
SBS	Chr10	21431841	G-A	Hetero	INTERGENIC
SBS	Chr11	15777164	C-A	Hetero	INTERGENIC
SBS	Chr11	16900711	A-G	Hetero	INTERGENIC
SBS	Chr11	21477890	G-T	Hetero	INTERGENIC
SBS	Chr11	25836513	C-T	Hetero	INTERGENIC
SBS	Chr12	7651787	A-T	Hetero	INTERGENIC
SBS	Chr12	7979056	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	2413747	2413758	11
Deletion	Chr6	4028091	4028092	1
Deletion	Chr5	4070946	4070947	1
Deletion	Chr12	11218001	11237000	18999
Deletion	Chr7	13596368	13596383	15
Deletion	Chr9	16896304	16896306	2
Deletion	Chr3	17538124	17538125	1
Deletion	Chr6	21238345	21238355	10
Deletion	Chr7	26012138	26012154	16
Deletion	Chr7	26247323	26247333	10
Deletion	Chr11	28766879	28766883	4
Deletion	Chr2	30369489	30369491	2
Deletion	Chr2	34677825	34677828	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	1292828	1364993
Inversion	Chr10	1292871	1323859
Inversion	Chr8	8790950	9028048	OsKitaake08g082500
Inversion	Chr8	8790960	9028070	OsKitaake08g082500
Inversion	Chr2	25606021	25816292	2
Inversion	Chr2	25606025	25816299	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes