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| Mutant Information |
|---|
| Mutant Name | FN576-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN576-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 41
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 6023318 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 7133545 | G-T | Homo | INTERGENIC | |
| SBS | Chr1 | 7766079 | C-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 7977734 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 14295889 | C-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 15570867 | G-T | Homo | INTERGENIC | |
| SBS | Chr2 | 15693110 | C-T | Homo | INTRON | |
| SBS | Chr2 | 15693119 | A-G | Homo | INTRON | |
| SBS | Chr2 | 26434027 | A-T | Homo | UTR_3_PRIME | |
| SBS | Chr3 | 1933477 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 1933478 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 11158243 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g153150 |
| SBS | Chr3 | 23607290 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 33064002 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 3505842 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 5732947 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 17030246 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 19379609 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 27608714 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 3788170 | G-T | Homo | INTERGENIC | |
| SBS | Chr5 | 14886181 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 19361763 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 704444 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 19729679 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 5425698 | A-C | Hetero | INTRON | |
| SBS | Chr7 | 7005153 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 7558425 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 7974311 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 14484264 | C-T | Homo | INTRON | |
| SBS | Chr9 | 6887686 | T-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 13878599 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 20451591 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 591861 | C-A | Homo | INTERGENIC | |
| SBS | Chr10 | 8024206 | T-C | Homo | INTERGENIC | |
| SBS | Chr10 | 13280092 | A-G | Homo | INTERGENIC | |
| SBS | Chr11 | 10756811 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 17457442 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 21366891 | C-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 2835880 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 11057727 | T-G | Homo | INTERGENIC | |
| SBS | Chr12 | 19521901 | A-G | Hetero | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 713186 | 713191 | 5 | |
| Deletion | Chr8 | 1440863 | 1440865 | 2 | |
| Deletion | Chr7 | 2074832 | 2074838 | 6 | |
| Deletion | Chr11 | 5620001 | 5637000 | 16999 | OsKitaake11g069000 |
| Deletion | Chr11 | 6549001 | 6587000 | 37999 | 3 |
| Deletion | Chr6 | 12541397 | 12541399 | 2 | |
| Deletion | Chr1 | 12613055 | 12613056 | 1 | |
| Deletion | Chr11 | 16465001 | 16523000 | 57999 | 2 |
| Deletion | Chr4 | 17009811 | 17009813 | 2 | |
| Deletion | Chr1 | 17988658 | 17988843 | 185 | OsKitaake01g182400 |
| Deletion | Chr12 | 19600589 | 19600591 | 2 | |
| Deletion | Chr3 | 30199909 | 30199914 | 5 | |
| Deletion | Chr4 | 31497001 | 31517000 | 19999 | 4 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 4070341 | 4070344 | 2 | |
| Insertion | Chr5 | 18228833 | 18228835 | 1 | |
| Insertion | Chr11 | 7050357 | 7050360 | 2 | |
| Insertion | Chr11 | 16709257 | 16709260 | 2 |
Inversions: 69
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 1105907 | 1106141 | |
| Inversion | Chr2 | 1157620 | 1157763 | OsKitaake02g017300 |
| Inversion | Chr1 | 1843554 | 1843870 | OsKitaake01g022200 |
| Inversion | Chr7 | 2036380 | 2036485 | |
| Inversion | Chr11 | 2639368 | 2639487 | |
| Inversion | Chr7 | 2893336 | 2893555 | OsKitaake07g036800 |
| Inversion | Chr1 | 3872053 | 3872177 | |
| Inversion | Chr7 | 4957098 | 4957258 | |
| Inversion | Chr7 | 5036197 | 5036431 | |
| Inversion | Chr3 | 5293887 | 5293996 | OsKitaake03g075000 |
| Inversion | Chr9 | 5496423 | 5496598 | |
| Inversion | Chr11 | 5636300 | 6362123 | |
| Inversion | Chr7 | 5637464 | 5637863 | OsKitaake07g068600 |
| Inversion | Chr11 | 5662352 | 6597438 | OsKitaake11g069300 |
| Inversion | Chr11 | 5663859 | 6360928 | OsKitaake11g069300 |
| Inversion | Chr10 | 5828403 | 5828560 | |
| Inversion | Chr11 | 6362107 | 6549778 | OsKitaake11g077900 |
| Inversion | Chr11 | 6584268 | 6585350 | |
| Inversion | Chr3 | 6749984 | 6750108 | OsKitaake03g095800 |
| Inversion | Chr10 | 6950965 | 6951123 | OsKitaake10g046500 |
| Inversion | Chr4 | 7134965 | 7135245 | |
| Inversion | Chr5 | 7962360 | 7962758 | OsKitaake05g078700 |
| Inversion | Chr9 | 8492319 | 8492609 | |
| Inversion | Chr1 | 8697856 | 8698111 | |
| Inversion | Chr3 | 8700074 | 8700460 | OsKitaake03g119100 |
| Inversion | Chr3 | 9030981 | 9031184 | OsKitaake03g124000 |
| Inversion | Chr11 | 9286155 | 9286348 | OsKitaake11g097400 |
| Inversion | Chr9 | 9863043 | 9863334 | |
| Inversion | Chr11 | 10009354 | 10009492 | OsKitaake11g101900 |
| Inversion | Chr7 | 10229612 | 10229956 | |
| Inversion | Chr3 | 10368420 | 10368655 | |
| Inversion | Chr3 | 10370809 | 10371042 | |
| Inversion | Chr3 | 11564847 | 11565206 | |
| Inversion | Chr8 | 12110643 | 12110806 | OsKitaake08g105600 |
| Inversion | Chr4 | 12131002 | 12131175 | OsKitaake04g058900 |
| Inversion | Chr3 | 12652490 | 12652677 | OsKitaake03g170700 |
| Inversion | Chr1 | 13519185 | 13519597 | |
| Inversion | Chr5 | 13970885 | 13971081 | OsKitaake05g108000 |
| Inversion | Chr7 | 16040353 | 16040547 | |
| Inversion | Chr2 | 16173450 | 16173663 | |
| Inversion | Chr7 | 16825896 | 16826105 | OsKitaake07g138000 |
| Inversion | Chr10 | 18290461 | 18290679 | OsKitaake10g129200 |
| Inversion | Chr12 | 18736559 | 18736750 | |
| Inversion | Chr12 | 18832910 | 18833219 | |
| Inversion | Chr7 | 19669924 | 19670183 | OsKitaake07g160400 |
| Inversion | Chr11 | 19759752 | 19759946 | |
| Inversion | Chr5 | 19834372 | 19834653 | OsKitaake05g157600 |
| Inversion | Chr9 | 20590535 | 20590716 | |
| Inversion | Chr8 | 20667023 | 20667181 | |
| Inversion | Chr9 | 20991251 | 20991504 | |
| Inversion | Chr2 | 21476009 | 21476214 | OsKitaake02g207400 |
| Inversion | Chr3 | 22291382 | 22291551 | OsKitaake03g242200 |
| Inversion | Chr12 | 22705971 | 22706456 | OsKitaake12g178900 |
| Inversion | Chr7 | 23233281 | 23233588 | OsKitaake07g201600 |
| Inversion | Chr6 | 23819308 | 23819503 | OsKitaake06g209900 |
| Inversion | Chr12 | 25301973 | 25302172 | |
| Inversion | Chr8 | 26925466 | 26925809 | OsKitaake08g218700 |
| Inversion | Chr4 | 27550658 | 27550897 | OsKitaake04g201900 |
| Inversion | Chr4 | 29075370 | 29075478 | |
| Inversion | Chr2 | 29821922 | 29822227 | OsKitaake02g301600 |
| Inversion | Chr4 | 31534037 | 31534176 | OsKitaake04g248200 |
| Inversion | Chr1 | 32551559 | 32551827 | |
| Inversion | Chr1 | 33605291 | 33605688 | OsKitaake01g344500 |
| Inversion | Chr3 | 33658197 | 33658352 | OsKitaake03g362000 |
| Inversion | Chr1 | 34587519 | 34587794 | 2 |
| Inversion | Chr1 | 34992384 | 34992720 | OsKitaake01g368700 |
| Inversion | Chr3 | 35393753 | 35393962 | |
| Inversion | Chr3 | 37135541 | 37135678 | OsKitaake03g415000 |
| Inversion | Chr1 | 39966580 | 39966826 | OsKitaake01g432500 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 1854512 | Chr1 | 8344291 | |
| Translocation | Chr12 | 3080879 | Chr1 | 18940134 | OsKitaake12g044900 |
| Translocation | Chr12 | 3083220 | Chr1 | 18940128 | OsKitaake12g044900 |
| Translocation | Chr12 | 3083264 | Chr1 | 8344028 | OsKitaake12g044900 |