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| Mutant Information |
|---|
| Mutant Name | FN577-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN577-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 13726111 | A-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 14633249 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 14821651 | C-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 28731887 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 10665855 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 17736780 | G-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 24487013 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 24601574 | T-A | Hetero | INTRON | |
| SBS | Chr3 | 24601575 | T-A | Hetero | INTRON | |
| SBS | Chr3 | 24601580 | C-T | Hetero | INTRON | |
| SBS | Chr4 | 6764856 | G-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 7418774 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 10315710 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 9521788 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr5 | 29272579 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 7942942 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 11683072 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 15845449 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 19962834 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 29070687 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 13233844 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 21332893 | T-A | Homo | INTERGENIC | |
| SBS | Chr8 | 28557312 | C-A | Homo | INTERGENIC | |
| SBS | Chr9 | 2492564 | A-G | Hetero | INTRON | |
| SBS | Chr9 | 20260418 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 4642534 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 6495819 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 12528327 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 11615668 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 15898925 | T-A | Homo | INTERGENIC | |
| SBS | Chr12 | 3468664 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 24848965 | A-G | Hetero | INTRON |
Deletions: 16
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 1932610 | 1932612 | 2 | |
| Deletion | Chr11 | 3742508 | 3742516 | 8 | |
| Deletion | Chr6 | 4880994 | 4880995 | 1 | |
| Deletion | Chr10 | 5125783 | 5125784 | 1 | |
| Deletion | Chr9 | 5242787 | 5242788 | 1 | |
| Deletion | Chr6 | 5994000 | 5994003 | 3 | |
| Deletion | Chr3 | 8625621 | 8625623 | 2 | |
| Deletion | Chr2 | 9653001 | 9738000 | 84999 | 12 |
| Deletion | Chr8 | 13677694 | 13677707 | 13 | |
| Deletion | Chr4 | 15747986 | 15747990 | 4 | |
| Deletion | Chr2 | 16274663 | 16274665 | 2 | |
| Deletion | Chr7 | 17229138 | 17229140 | 2 | |
| Deletion | Chr4 | 19980351 | 19980353 | 2 | |
| Deletion | Chr7 | 25433611 | 25433622 | 11 | |
| Deletion | Chr3 | 27118221 | 27118236 | 15 | |
| Deletion | Chr2 | 28610572 | 28610576 | 4 | OsKitaake02g288000 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 27305047 | 27305051 | 3 | |
| Insertion | Chr9 | 10160983 | 10160987 | 3 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 17361720 | 17381580 | 2 |
| Inversion | Chr5 | 17361723 | 17381585 | 2 |
| Inversion | Chr6 | 19571063 | 19642985 | |
| Inversion | Chr6 | 19571073 | 19643011 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 19502041 | Chr7 | 26366855 | OsKitaake07g243000 |
| Translocation | Chr12 | 19502269 | Chr7 | 26366853 | OsKitaake07g243000 |