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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	FN579-S [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN579-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6009198 G-A Hetero INTRON
SBS Chr1 35139972 C-T Hetero INTERGENIC
SBS Chr1 41780302 G-T Homo INTERGENIC
SBS Chr2 11235673 G-A Homo INTERGENIC
SBS Chr2 32015073 C-T Hetero INTERGENIC
SBS Chr3 2621236 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g037100
SBS Chr3 2827766 C-A Hetero INTERGENIC
SBS Chr3 20161138 C-A Hetero INTERGENIC
SBS Chr3 27382756 G-T Homo INTERGENIC
SBS Chr3 27382757 C-T Homo INTERGENIC
SBS Chr3 32453999 A-T Hetero INTERGENIC
SBS Chr4 13762996 C-T Homo INTERGENIC
SBS Chr4 31037308 C-T Homo INTERGENIC
SBS Chr4 34798796 T-C Hetero INTERGENIC
SBS Chr5 15061891 C-T Hetero INTERGENIC
SBS Chr5 17055141 T-A Hetero INTERGENIC
SBS Chr5 17393139 G-A Hetero INTERGENIC
SBS Chr5 22339650 T-C Homo INTRON
SBS Chr6 5317938 G-C Hetero INTERGENIC
SBS Chr6 5599063 C-G Hetero INTERGENIC
SBS Chr6 10140081 G-A Hetero INTERGENIC
SBS Chr6 17879100 G-A Hetero INTERGENIC
SBS Chr7 914593 C-G Homo NON_SYNONYMOUS_CODING OsKitaake07g011600
SBS Chr7 18247141 G-A Homo INTERGENIC
SBS Chr8 7488944 C-T Homo INTERGENIC
SBS Chr8 10982921 A-C Hetero INTERGENIC
SBS Chr8 10993820 G-A Homo INTERGENIC
SBS Chr8 14423315 G-A Hetero INTERGENIC
SBS Chr8 15972878 G-A Homo INTERGENIC
SBS Chr9 427985 G-A Homo INTERGENIC
SBS Chr9 680743 G-A Hetero INTERGENIC
SBS Chr10 12971836 C-T Homo INTERGENIC
SBS Chr10 17170553 C-G Homo INTERGENIC
SBS Chr11 14860091 C-T Homo INTERGENIC
SBS Chr11 19971203 C-T Hetero INTERGENIC
SBS Chr11 25985991 C-T Homo INTRON
SBS Chr12 3641461 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake12g050700
SBS Chr12 9696140 G-C Hetero INTERGENIC
SBS Chr12 10586773 C-T Homo INTERGENIC
SBS Chr12 11911604 G-C Homo INTERGENIC
SBS Chr12 23110361 C-A Homo INTERGENIC
SBS Chr12 24882708 T-C Homo INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 3143398 3143577 179
Deletion Chr10 4921690 4921695 5
Deletion Chr5 5510262 5510264 2
Deletion Chr10 5921716 5921717 1 OsKitaake10g040600
Deletion Chr4 8144208 8144213 5
Deletion Chr4 9571905 9571912 7
Deletion Chr1 9644001 9662000 17999 OsKitaake01g123400
Deletion Chr7 18804001 18867000 62999 3
Deletion Chr6 19282501 19282512 11
Deletion Chr4 19435001 19448000 12999 OsKitaake04g099601
Deletion Chr2 19688040 19688053 13
Deletion Chr2 30395743 30395751 8
Deletion Chr4 31382512 31382517 5
Deletion Chr3 32678894 32678896 2
Deletion Chr1 37663211 37663213 2

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 8087489 8087492 2
Insertion Chr5 5552618 5552621 2
Insertion Chr5 27657357 27657362 4
Insertion Chr11 12105910 12105913 2
Insertion Chr6 11347 11349 1
Insertion Chr10 1175187 1175190 2
Insertion Chr11 18736078 18736082 3

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 8225334 8365063 OsKitaake03g113800
Inversion Chr3 32428287 32452099

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 13435167 Chr10 15331287 OsKitaake12g111400
Translocation Chr12 13435717 Chr10 15331292 OsKitaake12g111400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6009198	G-A	Hetero	INTRON
SBS	Chr1	35139972	C-T	Hetero	INTERGENIC
SBS	Chr1	41780302	G-T	Homo	INTERGENIC
SBS	Chr2	11235673	G-A	Homo	INTERGENIC
SBS	Chr2	32015073	C-T	Hetero	INTERGENIC
SBS	Chr3	2621236	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g037100
SBS	Chr3	2827766	C-A	Hetero	INTERGENIC
SBS	Chr3	20161138	C-A	Hetero	INTERGENIC
SBS	Chr3	27382756	G-T	Homo	INTERGENIC
SBS	Chr3	27382757	C-T	Homo	INTERGENIC
SBS	Chr3	32453999	A-T	Hetero	INTERGENIC
SBS	Chr4	13762996	C-T	Homo	INTERGENIC
SBS	Chr4	31037308	C-T	Homo	INTERGENIC
SBS	Chr4	34798796	T-C	Hetero	INTERGENIC
SBS	Chr5	15061891	C-T	Hetero	INTERGENIC
SBS	Chr5	17055141	T-A	Hetero	INTERGENIC
SBS	Chr5	17393139	G-A	Hetero	INTERGENIC
SBS	Chr5	22339650	T-C	Homo	INTRON
SBS	Chr6	5317938	G-C	Hetero	INTERGENIC
SBS	Chr6	5599063	C-G	Hetero	INTERGENIC
SBS	Chr6	10140081	G-A	Hetero	INTERGENIC
SBS	Chr6	17879100	G-A	Hetero	INTERGENIC
SBS	Chr7	914593	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g011600
SBS	Chr7	18247141	G-A	Homo	INTERGENIC
SBS	Chr8	7488944	C-T	Homo	INTERGENIC
SBS	Chr8	10982921	A-C	Hetero	INTERGENIC
SBS	Chr8	10993820	G-A	Homo	INTERGENIC
SBS	Chr8	14423315	G-A	Hetero	INTERGENIC
SBS	Chr8	15972878	G-A	Homo	INTERGENIC
SBS	Chr9	427985	G-A	Homo	INTERGENIC
SBS	Chr9	680743	G-A	Hetero	INTERGENIC
SBS	Chr10	12971836	C-T	Homo	INTERGENIC
SBS	Chr10	17170553	C-G	Homo	INTERGENIC
SBS	Chr11	14860091	C-T	Homo	INTERGENIC
SBS	Chr11	19971203	C-T	Hetero	INTERGENIC
SBS	Chr11	25985991	C-T	Homo	INTRON
SBS	Chr12	3641461	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g050700
SBS	Chr12	9696140	G-C	Hetero	INTERGENIC
SBS	Chr12	10586773	C-T	Homo	INTERGENIC
SBS	Chr12	11911604	G-C	Homo	INTERGENIC
SBS	Chr12	23110361	C-A	Homo	INTERGENIC
SBS	Chr12	24882708	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	3143398	3143577	179
Deletion	Chr10	4921690	4921695	5
Deletion	Chr5	5510262	5510264	2
Deletion	Chr10	5921716	5921717	1	OsKitaake10g040600
Deletion	Chr4	8144208	8144213	5
Deletion	Chr4	9571905	9571912	7
Deletion	Chr1	9644001	9662000	17999	OsKitaake01g123400
Deletion	Chr7	18804001	18867000	62999	3
Deletion	Chr6	19282501	19282512	11
Deletion	Chr4	19435001	19448000	12999	OsKitaake04g099601
Deletion	Chr2	19688040	19688053	13
Deletion	Chr2	30395743	30395751	8
Deletion	Chr4	31382512	31382517	5
Deletion	Chr3	32678894	32678896	2
Deletion	Chr1	37663211	37663213	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	8225334	8365063	OsKitaake03g113800
Inversion	Chr3	32428287	32452099

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes