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Mutant Information

Mutant Name	FN581-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN581-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 34982742 T-A Hetero INTERGENIC
SBS Chr2 9697287 A-C Homo INTERGENIC
SBS Chr2 9697292 A-G Homo INTERGENIC
SBS Chr2 19969270 T-C Hetero INTERGENIC
SBS Chr2 34194441 G-T Homo INTERGENIC
SBS Chr3 6205163 T-C Homo INTERGENIC
SBS Chr3 18161634 G-A Homo INTRON
SBS Chr4 6282882 G-C Homo INTERGENIC
SBS Chr4 6481744 C-T Homo INTERGENIC
SBS Chr4 16492227 G-A Hetero INTRON
SBS Chr4 23507394 C-T Hetero INTERGENIC
SBS Chr4 25581441 T-G Homo UTR_3_PRIME
SBS Chr4 34806032 A-T Hetero INTRON
SBS Chr4 34806033 C-T Hetero INTRON
SBS Chr5 3330901 G-C Homo INTERGENIC
SBS Chr5 5021629 T-C Homo INTERGENIC
SBS Chr5 5113348 G-A Homo INTERGENIC
SBS Chr5 11274317 C-T Homo SPLICE_SITE_REGION
SBS Chr5 26659752 A-G Hetero INTRON
SBS Chr6 10474604 G-C Hetero INTRON
SBS Chr6 14443796 C-T Hetero INTERGENIC
SBS Chr6 29363479 T-A Hetero UTR_5_PRIME
SBS Chr7 13066389 G-A Homo INTERGENIC
SBS Chr7 22171870 T-C Hetero INTRON
SBS Chr8 6971806 C-T Hetero INTERGENIC
SBS Chr8 18399735 A-T Homo INTERGENIC
SBS Chr9 10054378 G-T Homo INTERGENIC
SBS Chr9 17461026 C-T Hetero INTERGENIC
SBS Chr9 21307876 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake09g184100
SBS Chr9 22594095 T-G Hetero INTRON
SBS Chr10 20825720 A-T Homo INTERGENIC
SBS Chr11 22027174 C-T Homo INTERGENIC
SBS Chr12 2569806 G-A Hetero INTERGENIC
SBS Chr12 6337867 C-T Hetero INTRON
SBS Chr12 16069065 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g123250
SBS Chr12 21919840 C-A Hetero INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 3410627 3410629 2
Deletion Chr5 5022154 5022167 13
Deletion Chr11 5781418 5781419 1
Deletion Chr2 7547452 7547463 11
Deletion Chr1 7662332 7662335 3
Deletion Chr6 8001128 8001129 1 OsKitaake06g101900
Deletion Chr1 8116863 8116916 53
Deletion Chr2 10689938 10689941 3
Deletion Chr4 11344307 11344312 5
Deletion Chr5 14505223 14505224 1
Deletion Chr7 14669987 14669991 4
Deletion Chr11 18724388 18724389 1
Deletion Chr4 19307227 19307231 4
Deletion Chr8 19412001 19537000 124999 10
Deletion Chr9 21132394 21132395 1 OsKitaake09g182400
Deletion Chr5 21887144 21887145 1
Deletion Chr1 22316950 22316954 4
Deletion Chr12 25538001 25632000 93999 13
Deletion Chr2 29936009 29936014 5
Deletion Chr2 34110872 34110882 10
Deletion Chr1 41439318 41439320 2
Deletion Chr1 43494180 43494181 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 12633210 12633212 1

Inversions: 8

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 9675580 10632006 OsKitaake06g119501
Inversion Chr6 9675586 10632005 OsKitaake06g119501
Inversion Chr9 16243688 16668274
Inversion Chr9 16243690 16668299
Inversion Chr8 17414566 18069905
Inversion Chr8 19388606 19413891
Inversion Chr8 19388630 19534848
Inversion Chr11 21612193 21700918

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 21612203 Chr1 31631770
Translocation Chr12 24021760 Chr4 34590100 OsKitaake04g288800
Translocation Chr12 24021763 Chr4 34590281 OsKitaake04g288800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	34982742	T-A	Hetero	INTERGENIC
SBS	Chr2	9697287	A-C	Homo	INTERGENIC
SBS	Chr2	9697292	A-G	Homo	INTERGENIC
SBS	Chr2	19969270	T-C	Hetero	INTERGENIC
SBS	Chr2	34194441	G-T	Homo	INTERGENIC
SBS	Chr3	6205163	T-C	Homo	INTERGENIC
SBS	Chr3	18161634	G-A	Homo	INTRON
SBS	Chr4	6282882	G-C	Homo	INTERGENIC
SBS	Chr4	6481744	C-T	Homo	INTERGENIC
SBS	Chr4	16492227	G-A	Hetero	INTRON
SBS	Chr4	23507394	C-T	Hetero	INTERGENIC
SBS	Chr4	25581441	T-G	Homo	UTR_3_PRIME
SBS	Chr4	34806032	A-T	Hetero	INTRON
SBS	Chr4	34806033	C-T	Hetero	INTRON
SBS	Chr5	3330901	G-C	Homo	INTERGENIC
SBS	Chr5	5021629	T-C	Homo	INTERGENIC
SBS	Chr5	5113348	G-A	Homo	INTERGENIC
SBS	Chr5	11274317	C-T	Homo	SPLICE_SITE_REGION
SBS	Chr5	26659752	A-G	Hetero	INTRON
SBS	Chr6	10474604	G-C	Hetero	INTRON
SBS	Chr6	14443796	C-T	Hetero	INTERGENIC
SBS	Chr6	29363479	T-A	Hetero	UTR_5_PRIME
SBS	Chr7	13066389	G-A	Homo	INTERGENIC
SBS	Chr7	22171870	T-C	Hetero	INTRON
SBS	Chr8	6971806	C-T	Hetero	INTERGENIC
SBS	Chr8	18399735	A-T	Homo	INTERGENIC
SBS	Chr9	10054378	G-T	Homo	INTERGENIC
SBS	Chr9	17461026	C-T	Hetero	INTERGENIC
SBS	Chr9	21307876	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g184100
SBS	Chr9	22594095	T-G	Hetero	INTRON
SBS	Chr10	20825720	A-T	Homo	INTERGENIC
SBS	Chr11	22027174	C-T	Homo	INTERGENIC
SBS	Chr12	2569806	G-A	Hetero	INTERGENIC
SBS	Chr12	6337867	C-T	Hetero	INTRON
SBS	Chr12	16069065	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g123250
SBS	Chr12	21919840	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	3410627	3410629	2
Deletion	Chr5	5022154	5022167	13
Deletion	Chr11	5781418	5781419	1
Deletion	Chr2	7547452	7547463	11
Deletion	Chr1	7662332	7662335	3
Deletion	Chr6	8001128	8001129	1	OsKitaake06g101900
Deletion	Chr1	8116863	8116916	53
Deletion	Chr2	10689938	10689941	3
Deletion	Chr4	11344307	11344312	5
Deletion	Chr5	14505223	14505224	1
Deletion	Chr7	14669987	14669991	4
Deletion	Chr11	18724388	18724389	1
Deletion	Chr4	19307227	19307231	4
Deletion	Chr8	19412001	19537000	124999	10
Deletion	Chr9	21132394	21132395	1	OsKitaake09g182400
Deletion	Chr5	21887144	21887145	1
Deletion	Chr1	22316950	22316954	4
Deletion	Chr12	25538001	25632000	93999	13
Deletion	Chr2	29936009	29936014	5
Deletion	Chr2	34110872	34110882	10
Deletion	Chr1	41439318	41439320	2
Deletion	Chr1	43494180	43494181	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	9675580	10632006	OsKitaake06g119501
Inversion	Chr6	9675586	10632005	OsKitaake06g119501
Inversion	Chr9	16243688	16668274
Inversion	Chr9	16243690	16668299
Inversion	Chr8	17414566	18069905
Inversion	Chr8	19388606	19413891
Inversion	Chr8	19388630	19534848
Inversion	Chr11	21612193	21700918

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes