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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	FN584-S [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN584-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 47

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 18170109 C-T Hetero INTERGENIC
SBS Chr1 29355758 G-A Homo INTRON
SBS Chr2 8359977 T-G Homo INTRON
SBS Chr2 23878641 A-C Homo NON_SYNONYMOUS_CODING OsKitaake02g234000
SBS Chr2 31514351 C-T Hetero INTERGENIC
SBS Chr3 4877397 G-C Hetero INTERGENIC
SBS Chr3 5819063 C-T Homo NON_SYNONYMOUS_CODING OsKitaake03g082600
SBS Chr3 5819064 C-T Homo NON_SYNONYMOUS_CODING OsKitaake03g082600
SBS Chr3 29406122 C-T Homo INTRON
SBS Chr3 31659379 A-G Hetero INTERGENIC
SBS Chr5 5846971 T-A Hetero INTERGENIC
SBS Chr5 27420603 C-T Hetero INTERGENIC
SBS Chr6 5875825 A-T Hetero INTERGENIC
SBS Chr6 7857046 T-C Hetero INTERGENIC
SBS Chr6 8841202 C-T Hetero INTERGENIC
SBS Chr6 10356081 C-G Hetero INTERGENIC
SBS Chr6 10675106 G-A Hetero INTERGENIC
SBS Chr6 12611098 T-A Hetero INTERGENIC
SBS Chr6 14878560 T-G Hetero INTERGENIC
SBS Chr6 22255969 G-A Homo INTERGENIC
SBS Chr6 22255970 T-A Homo INTERGENIC
SBS Chr6 25559576 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g227003
SBS Chr6 26260180 C-A Homo INTERGENIC
SBS Chr6 30664405 G-A Hetero INTRON
SBS Chr7 21891552 A-T Homo INTERGENIC
SBS Chr7 25468730 T-A Homo INTERGENIC
SBS Chr8 3658530 G-A Homo INTERGENIC
SBS Chr8 7289225 C-T Homo INTERGENIC
SBS Chr8 12274363 G-A Hetero INTERGENIC
SBS Chr8 24679091 T-G Homo INTERGENIC
SBS Chr8 27010916 A-T Hetero INTERGENIC
SBS Chr8 28086614 T-G Hetero INTRON
SBS Chr9 2871767 C-A Hetero INTERGENIC
SBS Chr9 4679979 A-T Hetero INTERGENIC
SBS Chr9 11539741 G-A Hetero INTERGENIC
SBS Chr9 21550799 T-A Hetero INTERGENIC
SBS Chr11 1242585 T-C Hetero INTERGENIC
SBS Chr11 3573088 G-A Hetero INTERGENIC
SBS Chr11 6613665 G-A Hetero INTERGENIC
SBS Chr11 7430731 G-A Hetero INTERGENIC
SBS Chr11 15691772 G-A Homo INTERGENIC
SBS Chr11 16305867 A-C Hetero INTERGENIC
SBS Chr11 24327351 C-T Hetero INTERGENIC
SBS Chr11 25198790 T-C Hetero INTERGENIC
SBS Chr11 28908836 G-A Homo INTERGENIC
SBS Chr12 3691519 A-T Hetero INTERGENIC
SBS Chr12 25342420 T-C Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 628579 628582 3
Deletion Chr8 2118648 2118659 11
Deletion Chr8 3904651 3904652 1
Deletion Chr6 14816260 14816264 4
Deletion Chr7 15328200 15328201 1
Deletion Chr2 16626934 16626937 3
Deletion Chr9 18403595 18403598 3
Deletion Chr8 18729001 18758000 28999 4
Deletion Chr9 18992693 18992698 5
Deletion Chr11 20138634 20138731 97
Deletion Chr11 20930209 20930210 1
Deletion Chr3 22307001 22326000 18999 2
Deletion Chr4 25730783 25730791 8
Deletion Chr5 29912422 29912428 6
Deletion Chr1 33321055 33321063 8

Insertions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 573066 573068 1
Insertion Chr1 30505650 30505653 2
Insertion Chr1 39329087 39329090 2
Insertion Chr2 2904591 2904594 2
Insertion Chr3 9650240 9650243 2
Insertion Chr3 24114556 24114561 4
Insertion Chr7 23426614 23426617 2
Insertion Chr8 6758453 6758456 2
Insertion Chr9 13042713 13042716 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18170109	C-T	Hetero	INTERGENIC
SBS	Chr1	29355758	G-A	Homo	INTRON
SBS	Chr2	8359977	T-G	Homo	INTRON
SBS	Chr2	23878641	A-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g234000
SBS	Chr2	31514351	C-T	Hetero	INTERGENIC
SBS	Chr3	4877397	G-C	Hetero	INTERGENIC
SBS	Chr3	5819063	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g082600
SBS	Chr3	5819064	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g082600
SBS	Chr3	29406122	C-T	Homo	INTRON
SBS	Chr3	31659379	A-G	Hetero	INTERGENIC
SBS	Chr5	5846971	T-A	Hetero	INTERGENIC
SBS	Chr5	27420603	C-T	Hetero	INTERGENIC
SBS	Chr6	5875825	A-T	Hetero	INTERGENIC
SBS	Chr6	7857046	T-C	Hetero	INTERGENIC
SBS	Chr6	8841202	C-T	Hetero	INTERGENIC
SBS	Chr6	10356081	C-G	Hetero	INTERGENIC
SBS	Chr6	10675106	G-A	Hetero	INTERGENIC
SBS	Chr6	12611098	T-A	Hetero	INTERGENIC
SBS	Chr6	14878560	T-G	Hetero	INTERGENIC
SBS	Chr6	22255969	G-A	Homo	INTERGENIC
SBS	Chr6	22255970	T-A	Homo	INTERGENIC
SBS	Chr6	25559576	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g227003
SBS	Chr6	26260180	C-A	Homo	INTERGENIC
SBS	Chr6	30664405	G-A	Hetero	INTRON
SBS	Chr7	21891552	A-T	Homo	INTERGENIC
SBS	Chr7	25468730	T-A	Homo	INTERGENIC
SBS	Chr8	3658530	G-A	Homo	INTERGENIC
SBS	Chr8	7289225	C-T	Homo	INTERGENIC
SBS	Chr8	12274363	G-A	Hetero	INTERGENIC
SBS	Chr8	24679091	T-G	Homo	INTERGENIC
SBS	Chr8	27010916	A-T	Hetero	INTERGENIC
SBS	Chr8	28086614	T-G	Hetero	INTRON
SBS	Chr9	2871767	C-A	Hetero	INTERGENIC
SBS	Chr9	4679979	A-T	Hetero	INTERGENIC
SBS	Chr9	11539741	G-A	Hetero	INTERGENIC
SBS	Chr9	21550799	T-A	Hetero	INTERGENIC
SBS	Chr11	1242585	T-C	Hetero	INTERGENIC
SBS	Chr11	3573088	G-A	Hetero	INTERGENIC
SBS	Chr11	6613665	G-A	Hetero	INTERGENIC
SBS	Chr11	7430731	G-A	Hetero	INTERGENIC
SBS	Chr11	15691772	G-A	Homo	INTERGENIC
SBS	Chr11	16305867	A-C	Hetero	INTERGENIC
SBS	Chr11	24327351	C-T	Hetero	INTERGENIC
SBS	Chr11	25198790	T-C	Hetero	INTERGENIC
SBS	Chr11	28908836	G-A	Homo	INTERGENIC
SBS	Chr12	3691519	A-T	Hetero	INTERGENIC
SBS	Chr12	25342420	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	628579	628582	3
Deletion	Chr8	2118648	2118659	11
Deletion	Chr8	3904651	3904652	1
Deletion	Chr6	14816260	14816264	4
Deletion	Chr7	15328200	15328201	1
Deletion	Chr2	16626934	16626937	3
Deletion	Chr9	18403595	18403598	3
Deletion	Chr8	18729001	18758000	28999	4
Deletion	Chr9	18992693	18992698	5
Deletion	Chr11	20138634	20138731	97
Deletion	Chr11	20930209	20930210	1
Deletion	Chr3	22307001	22326000	18999	2
Deletion	Chr4	25730783	25730791	8
Deletion	Chr5	29912422	29912428	6
Deletion	Chr1	33321055	33321063	8

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes