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| Mutant Information |
|---|
| Mutant Name | FN585-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN585-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 36
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 3269944 | G-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 16441839 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 36543665 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 38640830 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 40606987 | A-T | Hetero | INTRON | |
| SBS | Chr1 | 40606988 | C-T | Hetero | INTRON | |
| SBS | Chr2 | 6555833 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 3341802 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 7196695 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 8429580 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 9911527 | T-C | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 22060535 | A-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g241258 |
| SBS | Chr3 | 22060578 | C-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g241258 |
| SBS | Chr3 | 23778494 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 32548364 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 3391120 | G-C | Homo | INTERGENIC | |
| SBS | Chr4 | 7349222 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 11264777 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 15745209 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 21777633 | C-A | Hetero | START_GAINED | |
| SBS | Chr4 | 22185377 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 3245762 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr5 | 9332540 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 27942798 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 22107477 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 20827585 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 23597311 | T-A | Hetero | INTRON | |
| SBS | Chr8 | 26589319 | G-C | Homo | INTERGENIC | |
| SBS | Chr10 | 1897354 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake10g014800 |
| SBS | Chr10 | 12130445 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 20874542 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 12310527 | C-A | Homo | INTERGENIC | |
| SBS | Chr11 | 25010429 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 6858849 | G-A | Homo | INTRON | |
| SBS | Chr12 | 18129979 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake12g133400 |
| SBS | Chr12 | 21844420 | C-T | Homo | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 2843692 | 2843697 | 5 | |
| Deletion | Chr8 | 6142795 | 6142796 | 1 | |
| Deletion | Chr4 | 8869935 | 8869946 | 11 | |
| Deletion | Chr10 | 11578001 | 11787000 | 208999 | 16 |
| Deletion | Chr7 | 12374200 | 12374201 | 1 | |
| Deletion | Chr12 | 18231001 | 18272000 | 40999 | 3 |
| Deletion | Chr12 | 19230882 | 19230892 | 10 | |
| Deletion | Chr8 | 20909335 | 20909338 | 3 | OsKitaake08g156800 |
| Deletion | Chr4 | 24142610 | 24142617 | 7 | |
| Deletion | Chr1 | 25767860 | 25767863 | 3 | |
| Deletion | Chr5 | 29381217 | 29381220 | 3 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 44159912 | 44159919 | 6 | OsKitaake01g493050  |
| Insertion | Chr2 | 9181215 | 9181218 | 2 | |
| Insertion | Chr6 | 24187831 | 24187836 | 4 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 11145667 | 11206849 | |
| Inversion | Chr10 | 11206854 | 11384747 |