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| Mutant Information |
|---|
| Mutant Name | FN587-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN587-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 19136086 | C-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 26051097 | T-G | Homo | INTERGENIC | |
| SBS | Chr1 | 34141940 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 34314730 | T-C | Homo | INTRON | |
| SBS | Chr1 | 34314731 | T-C | Homo | INTRON | |
| SBS | Chr2 | 4878568 | G-A | Homo | STOP_GAINED | OsKitaake02g067301 |
| SBS | Chr2 | 30432595 | A-T | Hetero | UTR_5_PRIME | |
| SBS | Chr3 | 10572462 | T-A | Hetero | INTRON | |
| SBS | Chr3 | 25780447 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 26766926 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 7812099 | A-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake04g039700 |
| SBS | Chr4 | 9663979 | C-G | Homo | INTERGENIC | |
| SBS | Chr4 | 17241886 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 21145144 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 26684736 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 13651336 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 11264341 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr6 | 24126693 | G-C | Homo | INTERGENIC | |
| SBS | Chr7 | 27689975 | T-C | Homo | INTRON | |
| SBS | Chr8 | 9905983 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 17419568 | A-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 6726816 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 10999270 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 22681882 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 27011713 | A-T | Homo | INTERGENIC | |
| SBS | Chr11 | 27011715 | A-T | Homo | INTERGENIC | |
| SBS | Chr12 | 10581461 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 10581463 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 13589726 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 14290560 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 19661976 | A-T | Homo | INTERGENIC |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 1362737 | 1362738 | 1 | |
| Deletion | Chr8 | 5703217 | 5703227 | 10 | OsKitaake08g062600 |
| Deletion | Chr8 | 8798246 | 8798250 | 4 | |
| Deletion | Chr6 | 12939001 | 12954000 | 14999 | OsKitaake06g137600 |
| Deletion | Chr9 | 13325279 | 13325306 | 27 | OsKitaake09g088600 |
| Deletion | Chr1 | 13674001 | 14005000 | 330999 | 19 |
| Deletion | Chr10 | 14359001 | 14387000 | 27999 | |
| Deletion | Chr6 | 16127166 | 16127169 | 3 | |
| Deletion | Chr4 | 22566416 | 22566417 | 1 | |
| Deletion | Chr5 | 25098179 | 25098183 | 4 | |
| Deletion | Chr7 | 25453613 | 25453614 | 1 | |
| Deletion | Chr8 | 26730001 | 26784000 | 53999 | 8 |
| Deletion | Chr2 | 27422479 | 27422481 | 2 | |
| Deletion | Chr5 | 29633936 | 29633941 | 5 | |
| Deletion | Chr2 | 32834447 | 32834448 | 1 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 3485548 | 3485551 | 2 | |
| Insertion | Chr7 | 29549252 | 29549255 | 2 |
Inversions: 6
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 9406631 | 9406805 | OsKitaake08g086000 |
| Inversion | Chr6 | 12986118 | 12986295 | |
| Inversion | Chr1 | 15005909 | 15329191 | 2 |
| Inversion | Chr1 | 15005937 | 15329197 | 2 |
| Inversion | Chr5 | 22010036 | 22010229 | OsKitaake05g179500 |
| Inversion | Chr8 | 26470536 | 26778806 | 2 |