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Mutant Information

Mutant Name	FN589-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN589-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8337265 C-T Homo INTERGENIC
SBS Chr1 11739794 C-G Homo INTERGENIC
SBS Chr1 17448251 C-A Homo INTERGENIC
SBS Chr1 22686774 A-G Hetero INTERGENIC
SBS Chr1 24174292 T-A Hetero INTERGENIC
SBS Chr1 29687020 T-C Hetero INTERGENIC
SBS Chr1 43524012 G-A Homo INTRON
SBS Chr2 13878474 T-C Homo INTRON
SBS Chr2 21999215 A-G Hetero INTERGENIC
SBS Chr3 19319515 G-A Homo INTERGENIC
SBS Chr3 29178250 G-C Homo INTERGENIC
SBS Chr3 32311050 C-T Hetero INTERGENIC
SBS Chr4 1785254 C-T Homo INTERGENIC
SBS Chr4 15869695 G-T Hetero UTR_3_PRIME
SBS Chr4 24124735 C-T Hetero INTERGENIC
SBS Chr4 36550855 T-C Hetero INTERGENIC
SBS Chr5 5679497 A-T Hetero INTRON
SBS Chr5 24708510 C-T Hetero SYNONYMOUS_CODING
SBS Chr6 1028946 T-C Homo INTERGENIC
SBS Chr6 2069480 G-T Hetero INTRON
SBS Chr6 17249611 T-A Hetero INTERGENIC
SBS Chr6 17249612 C-A Hetero INTERGENIC
SBS Chr6 19100986 C-T Hetero INTERGENIC
SBS Chr6 19100987 A-T Hetero INTERGENIC
SBS Chr7 4440357 G-A Hetero INTERGENIC
SBS Chr7 13392137 A-T Hetero INTERGENIC
SBS Chr8 2909213 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g032000
SBS Chr8 28134950 T-A Homo INTERGENIC
SBS Chr8 28134951 T-A Homo INTERGENIC
SBS Chr9 6351227 C-T Hetero INTERGENIC
SBS Chr10 950668 T-C Hetero INTERGENIC
SBS Chr10 3734484 A-G Hetero INTERGENIC
SBS Chr10 4156543 T-G Hetero INTERGENIC
SBS Chr10 8764680 G-T Hetero INTERGENIC
SBS Chr10 22286570 C-T Homo UTR_3_PRIME
SBS Chr11 3482020 C-T Homo INTERGENIC
SBS Chr11 25260728 C-T Hetero INTERGENIC
SBS Chr11 27410660 G-C Hetero INTERGENIC
SBS Chr12 22262242 A-G Hetero INTERGENIC
SBS Chr12 22698617 T-C Hetero INTRON

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 887001 917000 29999 6
Deletion Chr9 1454778 1454780 2
Deletion Chr6 1674893 1674894 1
Deletion Chr11 3145641 3145647 6
Deletion Chr8 5423001 5434000 10999 2
Deletion Chr2 8293647 8293656 9
Deletion Chr4 8345709 8345776 67
Deletion Chr1 8703253 8703256 3
Deletion Chr11 9999338 9999341 3
Deletion Chr4 14061035 14061041 6
Deletion Chr3 14458238 14458243 5
Deletion Chr6 15060885 15060886 1
Deletion Chr8 15290066 15290067 1
Deletion Chr3 16272431 16272437 6 OsKitaake03g207000
Deletion Chr12 24768844 24768850 6
Deletion Chr7 26178318 26178319 1
Deletion Chr8 27131749 27131758 9
Deletion Chr2 27791231 27791232 1 OsKitaake02g279400

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 5535235 5535238 2
Insertion Chr11 27609464 27609467 2
Insertion Chr4 10143274 10143276 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 5140899 5422879 OsKitaake08g058900
Inversion Chr10 5639764 5639965 OsKitaake10g038900
Inversion Chr10 5639766 5639964 OsKitaake10g038900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8337265	C-T	Homo	INTERGENIC
SBS	Chr1	11739794	C-G	Homo	INTERGENIC
SBS	Chr1	17448251	C-A	Homo	INTERGENIC
SBS	Chr1	22686774	A-G	Hetero	INTERGENIC
SBS	Chr1	24174292	T-A	Hetero	INTERGENIC
SBS	Chr1	29687020	T-C	Hetero	INTERGENIC
SBS	Chr1	43524012	G-A	Homo	INTRON
SBS	Chr2	13878474	T-C	Homo	INTRON
SBS	Chr2	21999215	A-G	Hetero	INTERGENIC
SBS	Chr3	19319515	G-A	Homo	INTERGENIC
SBS	Chr3	29178250	G-C	Homo	INTERGENIC
SBS	Chr3	32311050	C-T	Hetero	INTERGENIC
SBS	Chr4	1785254	C-T	Homo	INTERGENIC
SBS	Chr4	15869695	G-T	Hetero	UTR_3_PRIME
SBS	Chr4	24124735	C-T	Hetero	INTERGENIC
SBS	Chr4	36550855	T-C	Hetero	INTERGENIC
SBS	Chr5	5679497	A-T	Hetero	INTRON
SBS	Chr5	24708510	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr6	1028946	T-C	Homo	INTERGENIC
SBS	Chr6	2069480	G-T	Hetero	INTRON
SBS	Chr6	17249611	T-A	Hetero	INTERGENIC
SBS	Chr6	17249612	C-A	Hetero	INTERGENIC
SBS	Chr6	19100986	C-T	Hetero	INTERGENIC
SBS	Chr6	19100987	A-T	Hetero	INTERGENIC
SBS	Chr7	4440357	G-A	Hetero	INTERGENIC
SBS	Chr7	13392137	A-T	Hetero	INTERGENIC
SBS	Chr8	2909213	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g032000
SBS	Chr8	28134950	T-A	Homo	INTERGENIC
SBS	Chr8	28134951	T-A	Homo	INTERGENIC
SBS	Chr9	6351227	C-T	Hetero	INTERGENIC
SBS	Chr10	950668	T-C	Hetero	INTERGENIC
SBS	Chr10	3734484	A-G	Hetero	INTERGENIC
SBS	Chr10	4156543	T-G	Hetero	INTERGENIC
SBS	Chr10	8764680	G-T	Hetero	INTERGENIC
SBS	Chr10	22286570	C-T	Homo	UTR_3_PRIME
SBS	Chr11	3482020	C-T	Homo	INTERGENIC
SBS	Chr11	25260728	C-T	Hetero	INTERGENIC
SBS	Chr11	27410660	G-C	Hetero	INTERGENIC
SBS	Chr12	22262242	A-G	Hetero	INTERGENIC
SBS	Chr12	22698617	T-C	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	887001	917000	29999	6
Deletion	Chr9	1454778	1454780	2
Deletion	Chr6	1674893	1674894	1
Deletion	Chr11	3145641	3145647	6
Deletion	Chr8	5423001	5434000	10999	2
Deletion	Chr2	8293647	8293656	9
Deletion	Chr4	8345709	8345776	67
Deletion	Chr1	8703253	8703256	3
Deletion	Chr11	9999338	9999341	3
Deletion	Chr4	14061035	14061041	6
Deletion	Chr3	14458238	14458243	5
Deletion	Chr6	15060885	15060886	1
Deletion	Chr8	15290066	15290067	1
Deletion	Chr3	16272431	16272437	6	OsKitaake03g207000
Deletion	Chr12	24768844	24768850	6
Deletion	Chr7	26178318	26178319	1
Deletion	Chr8	27131749	27131758	9
Deletion	Chr2	27791231	27791232	1	OsKitaake02g279400

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	5140899	5422879	OsKitaake08g058900
Inversion	Chr10	5639764	5639965	OsKitaake10g038900
Inversion	Chr10	5639766	5639964	OsKitaake10g038900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes