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Mutant Information

Mutant Name	FN590-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN590-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7320460 C-T Hetero INTERGENIC
SBS Chr1 18060824 A-G Hetero UTR_5_PRIME
SBS Chr1 22458957 A-T Homo INTRON
SBS Chr1 22458958 G-T Homo INTRON
SBS Chr1 23236682 G-A Hetero INTERGENIC
SBS Chr1 36303815 T-A Homo INTERGENIC
SBS Chr2 2398783 A-G Hetero INTERGENIC
SBS Chr2 18640123 G-A Hetero INTRON
SBS Chr2 22027213 T-G Homo INTERGENIC
SBS Chr3 5321386 T-A Hetero INTERGENIC
SBS Chr3 30114055 A-C Homo INTERGENIC
SBS Chr3 36769901 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g410000
SBS Chr4 22243271 C-G Hetero UTR_5_PRIME
SBS Chr5 1756343 C-T Hetero UTR_5_PRIME
SBS Chr5 22132892 G-C Hetero INTERGENIC
SBS Chr6 11272054 T-A Homo INTRON
SBS Chr7 4206143 A-G Homo INTERGENIC
SBS Chr7 15810543 C-T Homo INTERGENIC
SBS Chr7 21161618 A-G Hetero INTERGENIC
SBS Chr8 8900049 C-A Hetero INTERGENIC
SBS Chr8 16040773 C-G Hetero INTERGENIC
SBS Chr8 18933517 C-T Homo NON_SYNONYMOUS_CODING OsKitaake08g140300
SBS Chr9 7794150 G-A Hetero INTERGENIC
SBS Chr10 2281271 T-A Homo UTR_3_PRIME
SBS Chr11 18980340 C-A Homo UTR_3_PRIME
SBS Chr11 18980341 T-A Homo UTR_3_PRIME
SBS Chr11 18980342 C-A Homo UTR_3_PRIME
SBS Chr12 4221159 G-A Homo INTERGENIC
SBS Chr12 9029080 A-T Homo INTERGENIC
SBS Chr12 9846992 C-T Homo INTERGENIC
SBS Chr12 16102390 C-T Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 2383862 2383865 3
Deletion Chr7 2649021 2649028 7
Deletion Chr8 9339799 9339800 1
Deletion Chr7 12900563 12900572 9
Deletion Chr7 12901028 12901032 4
Deletion Chr11 16955450 16955464 14
Deletion Chr11 16957533 16957535 2
Deletion Chr4 17722892 17722893 1
Deletion Chr1 19992191 19992193 2
Deletion Chr1 21788083 21788089 6
Deletion Chr3 36331398 36331399 1
Deletion Chr3 37532185 37532187 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 19379155 20063894

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 9027468 Chr5 4428664 OsKitaake05g051400
Translocation Chr6 20063794 Chr4 9862644

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7320460	C-T	Hetero	INTERGENIC
SBS	Chr1	18060824	A-G	Hetero	UTR_5_PRIME
SBS	Chr1	22458957	A-T	Homo	INTRON
SBS	Chr1	22458958	G-T	Homo	INTRON
SBS	Chr1	23236682	G-A	Hetero	INTERGENIC
SBS	Chr1	36303815	T-A	Homo	INTERGENIC
SBS	Chr2	2398783	A-G	Hetero	INTERGENIC
SBS	Chr2	18640123	G-A	Hetero	INTRON
SBS	Chr2	22027213	T-G	Homo	INTERGENIC
SBS	Chr3	5321386	T-A	Hetero	INTERGENIC
SBS	Chr3	30114055	A-C	Homo	INTERGENIC
SBS	Chr3	36769901	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g410000
SBS	Chr4	22243271	C-G	Hetero	UTR_5_PRIME
SBS	Chr5	1756343	C-T	Hetero	UTR_5_PRIME
SBS	Chr5	22132892	G-C	Hetero	INTERGENIC
SBS	Chr6	11272054	T-A	Homo	INTRON
SBS	Chr7	4206143	A-G	Homo	INTERGENIC
SBS	Chr7	15810543	C-T	Homo	INTERGENIC
SBS	Chr7	21161618	A-G	Hetero	INTERGENIC
SBS	Chr8	8900049	C-A	Hetero	INTERGENIC
SBS	Chr8	16040773	C-G	Hetero	INTERGENIC
SBS	Chr8	18933517	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g140300
SBS	Chr9	7794150	G-A	Hetero	INTERGENIC
SBS	Chr10	2281271	T-A	Homo	UTR_3_PRIME
SBS	Chr11	18980340	C-A	Homo	UTR_3_PRIME
SBS	Chr11	18980341	T-A	Homo	UTR_3_PRIME
SBS	Chr11	18980342	C-A	Homo	UTR_3_PRIME
SBS	Chr12	4221159	G-A	Homo	INTERGENIC
SBS	Chr12	9029080	A-T	Homo	INTERGENIC
SBS	Chr12	9846992	C-T	Homo	INTERGENIC
SBS	Chr12	16102390	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	2383862	2383865	3
Deletion	Chr7	2649021	2649028	7
Deletion	Chr8	9339799	9339800	1
Deletion	Chr7	12900563	12900572	9
Deletion	Chr7	12901028	12901032	4
Deletion	Chr11	16955450	16955464	14
Deletion	Chr11	16957533	16957535	2
Deletion	Chr4	17722892	17722893	1
Deletion	Chr1	19992191	19992193	2
Deletion	Chr1	21788083	21788089	6
Deletion	Chr3	36331398	36331399	1
Deletion	Chr3	37532185	37532187	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	19379155	20063894

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes