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| Mutant Information |
|---|
| Mutant Name | FN591-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN591-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 37
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 17677488 | G-A | Hetero | INTRON | |
| SBS | Chr1 | 20207334 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 21392010 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 21392012 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 29369413 | A-T | Homo | INTERGENIC | |
| SBS | Chr2 | 31739634 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 14934181 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 21188596 | T-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr4 | 17430939 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 18964682 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 19507333 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 35289485 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 11967047 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 1245468 | A-T | Homo | STOP_GAINED | OsKitaake07g017800 |
| SBS | Chr7 | 14396634 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 22984299 | G-T | Homo | INTERGENIC | |
| SBS | Chr7 | 23594945 | T-A | Homo | INTERGENIC | |
| SBS | Chr8 | 28386056 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 113006 | G-A | Hetero | INTRON | |
| SBS | Chr9 | 382660 | T-A | Hetero | SPLICE_SITE_REGION | |
| SBS | Chr9 | 18236219 | A-G | Hetero | INTRON | |
| SBS | Chr10 | 2842046 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 6506394 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 7175438 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 8024368 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 23802991 | T-A | Homo | INTERGENIC | |
| SBS | Chr11 | 4081504 | C-A | Hetero | INTRON | |
| SBS | Chr11 | 11977355 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 12659409 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 26464100 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 26464101 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 28324182 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 8493162 | G-T | Homo | INTERGENIC | |
| SBS | Chr12 | 9090697 | G-C | Homo | INTERGENIC | |
| SBS | Chr12 | 14225185 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 15149089 | G-T | Homo | INTERGENIC | |
| SBS | Chr12 | 19051634 | G-T | Homo | INTERGENIC |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 1195511 | 1195513 | 2 | |
| Deletion | Chr12 | 1485718 | 1486109 | 391 | |
| Deletion | Chr3 | 2148277 | 2148282 | 5 | OsKitaake03g030600 |
| Deletion | Chr4 | 11709563 | 11709566 | 3 | |
| Deletion | Chr10 | 11930103 | 11930106 | 3 | |
| Deletion | Chr8 | 12027993 | 12027996 | 3 | |
| Deletion | Chr1 | 13684134 | 13684135 | 1 | |
| Deletion | Chr4 | 19646507 | 19646512 | 5 | |
| Deletion | Chr10 | 20246017 | 20246019 | 2 | |
| Deletion | Chr11 | 20568001 | 20700000 | 131999 | 17 |
| Deletion | Chr7 | 23175705 | 23175706 | 1 | |
| Deletion | Chr3 | 27042648 | 27042650 | 2 | |
| Deletion | Chr8 | 29233376 | 29233386 | 10 | |
| Deletion | Chr2 | 29664713 | 29664715 | 2 | |
| Deletion | Chr2 | 31604857 | 31604863 | 6 |
Insertions: 6
Inversions: 27
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 481456 | 482069 | OsKitaake02g007100 |
| Inversion | Chr10 | 2588438 | 2588624 | |
| Inversion | Chr10 | 3505898 | 3506194 | OsKitaake10g026400 |
| Inversion | Chr1 | 3899795 | 3900024 | OsKitaake01g052208 |
| Inversion | Chr6 | 5449631 | 5449977 | OsKitaake06g073100 |
| Inversion | Chr4 | 6125074 | 6125363 | |
| Inversion | Chr7 | 7142618 | 7142973 | |
| Inversion | Chr3 | 7733337 | 8663743 | |
| Inversion | Chr3 | 8197810 | 8662777 | |
| Inversion | Chr1 | 9293748 | 9293911 | |
| Inversion | Chr11 | 9787743 | 9787907 | OsKitaake11g100900 |
| Inversion | Chr1 | 11399514 | 11399747 | OsKitaake01g139300 |
| Inversion | Chr6 | 11457059 | 11457252 | OsKitaake06g126700 |
| Inversion | Chr3 | 14700026 | 14700246 | |
| Inversion | Chr11 | 18053102 | 18053315 | |
| Inversion | Chr1 | 18157834 | 18158009 | |
| Inversion | Chr2 | 18416967 | 18417148 | |
| Inversion | Chr1 | 18896014 | 18896415 | OsKitaake01g189800 |
| Inversion | Chr8 | 24323765 | 24324012 | |
| Inversion | Chr5 | 24671111 | 24671382 | |
| Inversion | Chr7 | 24764682 | 24765030 | |
| Inversion | Chr2 | 26087355 | 26087629 | OsKitaake02g257550 |
| Inversion | Chr11 | 26357487 | 26465043 | |
| Inversion | Chr3 | 28607109 | 28607239 | OsKitaake03g296600 |
| Inversion | Chr4 | 30751944 | 30752169 | OsKitaake04g237350 |
| Inversion | Chr1 | 34736182 | 34736486 | OsKitaake01g365200 |
| Inversion | Chr3 | 35340506 | 35340816 | OsKitaake03g387600 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 26357478 | Chr3 | 8666956 | |
| Translocation | Chr11 | 26359022 | Chr3 | 8663751 |