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Mutant Information

Mutant Name	FN593-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN593-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 21

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4000549 G-T Hetero INTERGENIC
SBS Chr1 31420796 T-A Homo INTERGENIC
SBS Chr1 31420797 T-A Homo INTERGENIC
SBS Chr3 9529736 G-T Homo UTR_5_PRIME
SBS Chr3 9529737 C-T Homo UTR_5_PRIME
SBS Chr3 11209064 G-A Homo UTR_5_PRIME
SBS Chr3 11257472 T-A Hetero INTERGENIC
SBS Chr3 15979947 A-T Hetero INTERGENIC
SBS Chr4 8606373 C-T Hetero INTERGENIC
SBS Chr4 13093846 C-T Hetero INTERGENIC
SBS Chr4 17727653 C-A Hetero INTRON
SBS Chr4 28342882 A-T Hetero INTERGENIC
SBS Chr7 1014354 C-A Hetero INTERGENIC
SBS Chr8 20413750 C-T Homo INTERGENIC
SBS Chr8 23784177 G-A Hetero INTERGENIC
SBS Chr10 300944 A-C Hetero INTERGENIC
SBS Chr10 2208109 G-A Homo INTERGENIC
SBS Chr11 14912681 G-A Hetero INTERGENIC
SBS Chr11 23264544 G-T Hetero INTERGENIC
SBS Chr12 3852238 C-T Hetero INTERGENIC
SBS Chr12 7791036 G-C Homo INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1192598 1192603 5
Deletion Chr1 3611165 3611176 11
Deletion Chr8 6141775 6141786 11
Deletion Chr10 9983572 9983573 1
Deletion Chr12 10738708 10738711 3
Deletion Chr5 12424862 12424863 1
Deletion Chr7 12472095 12472101 6
Deletion Chr8 17264253 17264339 86
Deletion Chr10 20255972 20255974 2
Deletion Chr5 21866351 21866353 2
Deletion Chr7 26219187 26219190 3
Deletion Chr4 30907260 30907262 2
Deletion Chr1 39474329 39474331 2
Deletion Chr1 41369686 41369692 6

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 30126816 30126818 1

Inversions: 9

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 96756 96976
Inversion Chr5 1392116 1439989 2
Inversion Chr5 1392136 1439998 2
Inversion Chr3 1494910 2047440 OsKitaake03g029400
Inversion Chr3 1494920 2047458 OsKitaake03g029400
Inversion Chr2 7801402 7801593 OsKitaake02g101900
Inversion Chr6 10966766 10967108
Inversion Chr7 13399152 13405410
Inversion Chr5 28308545 28309003

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4000549	G-T	Hetero	INTERGENIC
SBS	Chr1	31420796	T-A	Homo	INTERGENIC
SBS	Chr1	31420797	T-A	Homo	INTERGENIC
SBS	Chr3	9529736	G-T	Homo	UTR_5_PRIME
SBS	Chr3	9529737	C-T	Homo	UTR_5_PRIME
SBS	Chr3	11209064	G-A	Homo	UTR_5_PRIME
SBS	Chr3	11257472	T-A	Hetero	INTERGENIC
SBS	Chr3	15979947	A-T	Hetero	INTERGENIC
SBS	Chr4	8606373	C-T	Hetero	INTERGENIC
SBS	Chr4	13093846	C-T	Hetero	INTERGENIC
SBS	Chr4	17727653	C-A	Hetero	INTRON
SBS	Chr4	28342882	A-T	Hetero	INTERGENIC
SBS	Chr7	1014354	C-A	Hetero	INTERGENIC
SBS	Chr8	20413750	C-T	Homo	INTERGENIC
SBS	Chr8	23784177	G-A	Hetero	INTERGENIC
SBS	Chr10	300944	A-C	Hetero	INTERGENIC
SBS	Chr10	2208109	G-A	Homo	INTERGENIC
SBS	Chr11	14912681	G-A	Hetero	INTERGENIC
SBS	Chr11	23264544	G-T	Hetero	INTERGENIC
SBS	Chr12	3852238	C-T	Hetero	INTERGENIC
SBS	Chr12	7791036	G-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1192598	1192603	5
Deletion	Chr1	3611165	3611176	11
Deletion	Chr8	6141775	6141786	11
Deletion	Chr10	9983572	9983573	1
Deletion	Chr12	10738708	10738711	3
Deletion	Chr5	12424862	12424863	1
Deletion	Chr7	12472095	12472101	6
Deletion	Chr8	17264253	17264339	86
Deletion	Chr10	20255972	20255974	2
Deletion	Chr5	21866351	21866353	2
Deletion	Chr7	26219187	26219190	3
Deletion	Chr4	30907260	30907262	2
Deletion	Chr1	39474329	39474331	2
Deletion	Chr1	41369686	41369692	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	96756	96976
Inversion	Chr5	1392116	1439989	2
Inversion	Chr5	1392136	1439998	2
Inversion	Chr3	1494910	2047440	OsKitaake03g029400
Inversion	Chr3	1494920	2047458	OsKitaake03g029400
Inversion	Chr2	7801402	7801593	OsKitaake02g101900
Inversion	Chr6	10966766	10967108
Inversion	Chr7	13399152	13405410
Inversion	Chr5	28308545	28309003

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes