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| Mutant Information |
|---|
| Mutant Name | FN594-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN594-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 19195755 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 30560264 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 31177021 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g311600 |
| SBS | Chr1 | 40425593 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 3251490 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 19293849 | A-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 25713666 | G-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 25967857 | T-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 29210962 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 17766150 | C-A | Homo | INTERGENIC | |
| SBS | Chr3 | 17999077 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 18519724 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 28572408 | C-T | Homo | INTRON | |
| SBS | Chr5 | 3017248 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 14480635 | G-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr5 | 14480636 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g110400 |
| SBS | Chr5 | 17200309 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 29198483 | A-G | Homo | INTRON | |
| SBS | Chr6 | 14476980 | A-T | Homo | INTERGENIC | |
| SBS | Chr6 | 26764521 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 7326082 | T-A | Homo | INTERGENIC | |
| SBS | Chr7 | 18766626 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 28606799 | C-A | Homo | INTERGENIC | |
| SBS | Chr8 | 228881 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 12013976 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 20667630 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 12010038 | C-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr9 | 12689148 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 623856 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 18920424 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 21026637 | G-A | Hetero | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 506321 | 506322 | 1 | |
| Deletion | Chr6 | 3352546 | 3352554 | 8 | OsKitaake06g046700 |
| Deletion | Chr9 | 3434710 | 3434718 | 8 | |
| Deletion | Chr9 | 4111793 | 4111796 | 3 | |
| Deletion | Chr4 | 9848485 | 9848488 | 3 | |
| Deletion | Chr9 | 10907477 | 10907603 | 126 | |
| Deletion | Chr11 | 15281409 | 15281411 | 2 | |
| Deletion | Chr3 | 17320787 | 17320790 | 3 | |
| Deletion | Chr1 | 18443291 | 18443301 | 10 | |
| Deletion | Chr8 | 19987898 | 19987899 | 1 | |
| Deletion | Chr5 | 27057753 | 27057756 | 3 | |
| Deletion | Chr4 | 34161314 | 34161317 | 3 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 19004830 | 19004833 | 2 | |
| Insertion | Chr7 | 3416576 | 3416581 | 4 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 17125529 | Chr1 | 25015587 | |
| Translocation | Chr10 | 17125538 | Chr1 | 25016500 |