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| Mutant Information |
|---|
| Mutant Name | FN596-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN596-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 34
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 10559590 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 13965086 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 13965087 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 18565724 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 25909229 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 739503 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 739514 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 739525 | G-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 19694147 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 25093928 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 33281305 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 2829482 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 3761941 | T-C | Homo | INTRON | |
| SBS | Chr3 | 5147570 | C-G | Homo | INTERGENIC | |
| SBS | Chr3 | 9190856 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 11350179 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 16795162 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 28364772 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 33964905 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 21603334 | C-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr7 | 3982716 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 5563627 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 7458952 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 14374660 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 1704338 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr8 | 6117848 | C-G | Hetero | INTRON | |
| SBS | Chr8 | 24040885 | T-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 5929051 | T-A | Hetero | INTRON | |
| SBS | Chr9 | 18909869 | T-A | Homo | INTRON | |
| SBS | Chr10 | 3416544 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 21497212 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 1346440 | G-C | Homo | INTERGENIC | |
| SBS | Chr12 | 22416535 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 22416536 | C-A | Hetero | INTERGENIC |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 2868108 | 2868116 | 8 | |
| Deletion | Chr10 | 3084139 | 3084433 | 294 | |
| Deletion | Chr12 | 6632001 | 6656000 | 23999 | 6 |
| Deletion | Chr12 | 7150828 | 7150829 | 1 | |
| Deletion | Chr6 | 16786828 | 16786829 | 1 | OsKitaake06g158400 |
| Deletion | Chr11 | 22657771 | 22657773 | 2 | |
| Deletion | Chr6 | 26474141 | 26474145 | 4 | OsKitaake06g237800 |
| Deletion | Chr5 | 27130077 | 27130078 | 1 | |
| Deletion | Chr1 | 34758551 | 34758552 | 1 | |
| Deletion | Chr1 | 43808820 | 43808822 | 2 |