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| Mutant Information |
|---|
| Mutant Name | FN597-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN597-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 25
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 33203511 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 7628081 | A-T | Homo | INTERGENIC | |
| SBS | Chr2 | 18802437 | A-T | Homo | INTERGENIC | |
| SBS | Chr2 | 28879725 | G-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 3172469 | A-T | Homo | INTERGENIC | |
| SBS | Chr3 | 11174626 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g153500 |
| SBS | Chr3 | 13583091 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 35245018 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 27598852 | G-T | Hetero | UTR_5_PRIME | |
| SBS | Chr5 | 5782201 | A-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 6286380 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 6317098 | A-T | Homo | INTRON | |
| SBS | Chr6 | 6317099 | G-T | Homo | INTRON | |
| SBS | Chr6 | 11535383 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 15716575 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 20232442 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 25314373 | C-A | Hetero | START_GAINED | |
| SBS | Chr7 | 6233756 | C-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 6590419 | G-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 1412511 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake10g010100 |
| SBS | Chr11 | 5215009 | T-A | Hetero | INTRON | |
| SBS | Chr11 | 19529442 | T-G | Homo | INTERGENIC | |
| SBS | Chr11 | 25636089 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 5585476 | A-T | Homo | INTERGENIC | |
| SBS | Chr12 | 27055543 | G-A | Homo | INTERGENIC |
Deletions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 35001 | 51000 | 15999 | |
| Deletion | Chr6 | 76614 | 76615 | 1 | |
| Deletion | Chr12 | 3252144 | 3252161 | 17 | |
| Deletion | Chr4 | 7817902 | 7817903 | 1 | OsKitaake04g039700 |
| Deletion | Chr2 | 10155284 | 10155285 | 1 | OsKitaake02g121901 |
| Deletion | Chr6 | 11036008 | 11036013 | 5 | |
| Deletion | Chr1 | 29744850 | 29744851 | 1 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 21400340 | 21400343 | 2 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 1915496 | 1918308 | |
| Inversion | Chr11 | 5642481 | 5889991 | |
| Inversion | Chr11 | 5657598 | 5889995 | |
| Inversion | Chr6 | 21956930 | 22607497 | OsKitaake06g199300 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 5642487 | Chr10 | 2972161 | |
| Translocation | Chr11 | 5657587 | Chr10 | 1915486 |