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Mutant Information

Mutant Name	FN598-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN598-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6085785 C-T Hetero INTERGENIC
SBS Chr1 13860424 T-C Hetero INTERGENIC
SBS Chr1 29655323 G-C Homo INTERGENIC
SBS Chr2 233870 A-G Homo UTR_5_PRIME
SBS Chr2 2462207 A-C Hetero INTERGENIC
SBS Chr2 12190345 C-G Homo INTERGENIC
SBS Chr2 25802957 A-T Hetero INTERGENIC
SBS Chr3 16263324 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g206800
SBS Chr3 18066791 A-C Hetero INTRON
SBS Chr3 19223647 G-A Hetero INTERGENIC
SBS Chr3 28321554 A-G Hetero INTERGENIC
SBS Chr3 30537317 T-C Homo INTERGENIC
SBS Chr3 36958670 G-T Hetero INTERGENIC
SBS Chr4 1462214 C-T Homo INTERGENIC
SBS Chr4 9989502 T-C Homo INTERGENIC
SBS Chr4 10237104 C-T Homo INTERGENIC
SBS Chr4 28161318 C-T Homo INTERGENIC
SBS Chr5 1514062 G-A Hetero INTRON
SBS Chr5 16906552 C-T Hetero INTERGENIC
SBS Chr6 5453882 C-G Hetero INTERGENIC
SBS Chr6 8773187 A-G Homo INTERGENIC
SBS Chr6 11315395 C-T Homo NON_SYNONYMOUS_CODING OsKitaake06g125400
SBS Chr6 16833797 G-A Homo INTERGENIC
SBS Chr7 5376781 C-T Homo INTERGENIC
SBS Chr7 10226386 C-T Hetero INTERGENIC
SBS Chr7 21180901 T-A Hetero INTERGENIC
SBS Chr7 29505374 G-C Homo NON_SYNONYMOUS_CODING OsKitaake07g284300
SBS Chr8 2577412 C-T Homo INTERGENIC
SBS Chr8 3253102 C-A Hetero INTERGENIC
SBS Chr8 13391400 A-T Hetero INTERGENIC
SBS Chr8 14603677 C-G Hetero INTERGENIC
SBS Chr8 20251550 G-A Hetero UTR_3_PRIME
SBS Chr10 9457326 G-A Hetero INTERGENIC
SBS Chr10 11736818 T-A Homo INTERGENIC
SBS Chr11 3689356 C-T Homo INTERGENIC
SBS Chr11 6256177 G-A Homo INTERGENIC
SBS Chr11 10565455 T-C Hetero SYNONYMOUS_CODING
SBS Chr11 20499646 C-G Homo INTERGENIC
SBS Chr12 12980952 T-A Hetero INTERGENIC
SBS Chr12 25384115 G-A Hetero INTRON

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 2716833 2716837 4
Deletion Chr9 3922777 3922787 10
Deletion Chr11 6538383 6538391 8 OsKitaake11g077700
Deletion Chr6 9392690 9392691 1
Deletion Chr4 9991733 9991734 1
Deletion Chr2 11956156 11956163 7
Deletion Chr12 12438001 12446000 7999 OsKitaake12g106300
Deletion Chr5 12870771 12870772 1
Deletion Chr4 14139286 14139289 3
Deletion Chr11 19268801 19268803 2
Deletion Chr10 21004215 21004217 2
Deletion Chr2 25797670 25797672 2
Deletion Chr3 26813320 26813322 2
Deletion Chr7 29504983 29504998 15 OsKitaake07g284200
Deletion Chr1 29966125 29966135 10
Deletion Chr3 30537367 30537368 1
Deletion Chr4 32831581 32831582 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 1925584 1925587 2
Insertion Chr6 6770631 6770634 2
Insertion Chr6 16011312 16011314 1
Insertion Chr7 21820916 21820919 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 2634260 2994999 OsKitaake06g036100
Inversion Chr6 2634264 2995012 OsKitaake06g036100
Inversion Chr5 11316111 11316991
Inversion Chr5 11642799 11753235 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 7135284 Chr2 3836734 OsKitaake03g099500
Translocation Chr3 7135295 Chr2 3836376 OsKitaake03g099500
Translocation Chr7 10570633 Chr5 11316111
Translocation Chr7 10570793 Chr5 11642914 OsKitaake05g095700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6085785	C-T	Hetero	INTERGENIC
SBS	Chr1	13860424	T-C	Hetero	INTERGENIC
SBS	Chr1	29655323	G-C	Homo	INTERGENIC
SBS	Chr2	233870	A-G	Homo	UTR_5_PRIME
SBS	Chr2	2462207	A-C	Hetero	INTERGENIC
SBS	Chr2	12190345	C-G	Homo	INTERGENIC
SBS	Chr2	25802957	A-T	Hetero	INTERGENIC
SBS	Chr3	16263324	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g206800
SBS	Chr3	18066791	A-C	Hetero	INTRON
SBS	Chr3	19223647	G-A	Hetero	INTERGENIC
SBS	Chr3	28321554	A-G	Hetero	INTERGENIC
SBS	Chr3	30537317	T-C	Homo	INTERGENIC
SBS	Chr3	36958670	G-T	Hetero	INTERGENIC
SBS	Chr4	1462214	C-T	Homo	INTERGENIC
SBS	Chr4	9989502	T-C	Homo	INTERGENIC
SBS	Chr4	10237104	C-T	Homo	INTERGENIC
SBS	Chr4	28161318	C-T	Homo	INTERGENIC
SBS	Chr5	1514062	G-A	Hetero	INTRON
SBS	Chr5	16906552	C-T	Hetero	INTERGENIC
SBS	Chr6	5453882	C-G	Hetero	INTERGENIC
SBS	Chr6	8773187	A-G	Homo	INTERGENIC
SBS	Chr6	11315395	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g125400
SBS	Chr6	16833797	G-A	Homo	INTERGENIC
SBS	Chr7	5376781	C-T	Homo	INTERGENIC
SBS	Chr7	10226386	C-T	Hetero	INTERGENIC
SBS	Chr7	21180901	T-A	Hetero	INTERGENIC
SBS	Chr7	29505374	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g284300
SBS	Chr8	2577412	C-T	Homo	INTERGENIC
SBS	Chr8	3253102	C-A	Hetero	INTERGENIC
SBS	Chr8	13391400	A-T	Hetero	INTERGENIC
SBS	Chr8	14603677	C-G	Hetero	INTERGENIC
SBS	Chr8	20251550	G-A	Hetero	UTR_3_PRIME
SBS	Chr10	9457326	G-A	Hetero	INTERGENIC
SBS	Chr10	11736818	T-A	Homo	INTERGENIC
SBS	Chr11	3689356	C-T	Homo	INTERGENIC
SBS	Chr11	6256177	G-A	Homo	INTERGENIC
SBS	Chr11	10565455	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr11	20499646	C-G	Homo	INTERGENIC
SBS	Chr12	12980952	T-A	Hetero	INTERGENIC
SBS	Chr12	25384115	G-A	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	2716833	2716837	4
Deletion	Chr9	3922777	3922787	10
Deletion	Chr11	6538383	6538391	8	OsKitaake11g077700
Deletion	Chr6	9392690	9392691	1
Deletion	Chr4	9991733	9991734	1
Deletion	Chr2	11956156	11956163	7
Deletion	Chr12	12438001	12446000	7999	OsKitaake12g106300
Deletion	Chr5	12870771	12870772	1
Deletion	Chr4	14139286	14139289	3
Deletion	Chr11	19268801	19268803	2
Deletion	Chr10	21004215	21004217	2
Deletion	Chr2	25797670	25797672	2
Deletion	Chr3	26813320	26813322	2
Deletion	Chr7	29504983	29504998	15	OsKitaake07g284200
Deletion	Chr1	29966125	29966135	10
Deletion	Chr3	30537367	30537368	1
Deletion	Chr4	32831581	32831582	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	2634260	2994999	OsKitaake06g036100
Inversion	Chr6	2634264	2995012	OsKitaake06g036100
Inversion	Chr5	11316111	11316991
Inversion	Chr5	11642799	11753235	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes