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| Mutant Information |
|---|
| Mutant Name | FN618-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN618-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 23594883 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 29707636 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 5587190 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 9440643 | C-A | Homo | INTERGENIC | |
| SBS | Chr3 | 12019890 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g163400 |
| SBS | Chr3 | 35693058 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 36650360 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g407900 |
| SBS | Chr4 | 8536001 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 10504199 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 18517816 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 22133906 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 6777029 | A-G | Homo | SYNONYMOUS_CODING | |
| SBS | Chr5 | 30104122 | C-T | Hetero | #VALUE! | |
| SBS | Chr6 | 12925039 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 18701338 | A-G | Homo | INTERGENIC | |
| SBS | Chr7 | 4941726 | T-C | Hetero | UTR_3_PRIME | |
| SBS | Chr7 | 10259496 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 19934986 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 8467009 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 8467217 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 24872723 | G-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 25746328 | G-A | Hetero | UTR_5_PRIME | |
| SBS | Chr9 | 13484492 | C-G | Homo | INTERGENIC | |
| SBS | Chr11 | 878382 | T-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 6147681 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 13840188 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 16660882 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 28732510 | G-A | Hetero | INTRON |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 298001 | 348000 | 49999 | 2 |
| Deletion | Chr5 | 4254006 | 4254007 | 1 | |
| Deletion | Chr7 | 4575797 | 4575800 | 3 | OsKitaake07g056900 |
| Deletion | Chr10 | 7278001 | 7334000 | 55999 | 2 |
| Deletion | Chr3 | 8495843 | 8495845 | 2 | |
| Deletion | Chr8 | 10009029 | 10009038 | 9 | |
| Deletion | Chr11 | 10443174 | 10443177 | 3 | |
| Deletion | Chr12 | 11324001 | 11337000 | 12999 | |
| Deletion | Chr11 | 11377001 | 11391000 | 13999 | |
| Deletion | Chr11 | 12467001 | 12504000 | 36999 | |
| Deletion | Chr9 | 14840948 | 14840953 | 5 | |
| Deletion | Chr12 | 17357001 | 17391000 | 33999 | 4 |
| Deletion | Chr4 | 20502399 | 20502400 | 1 | |
| Deletion | Chr3 | 21256382 | 21256385 | 3 | |
| Deletion | Chr12 | 21299001 | 21407000 | 107999 | 7 |
| Deletion | Chr4 | 25468108 | 25468109 | 1 | |
| Deletion | Chr4 | 25755550 | 25755553 | 3 | |
| Deletion | Chr1 | 33764821 | 33764824 | 3 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 4426704 | 4426707 | 2 | |
| Insertion | Chr7 | 4716924 | 4716927 | 2 | |
| Insertion | Chr12 | 16545651 | 16545655 | 3 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 19198383 | 20122600 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr5 | 16650104 | Chr3 | 22137839 | 2 |
| Translocation | Chr5 | 16650110 | Chr3 | 22156454 | OsKitaake05g127300 |
| Translocation | Chr11 | 17130870 | Chr8 | 841926 | |
| Translocation | Chr11 | 17130876 | Chr8 | 839697 |