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| Mutant Information |
|---|
| Mutant Name | FN619-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN619-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 21
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 25178894 | A-T | Hetero | UTR_3_PRIME | |
| SBS | Chr2 | 31126006 | G-T | Hetero | INTRON | |
| SBS | Chr2 | 35079286 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 13156376 | A-T | Hetero | STOP_GAINED | OsKitaake03g176100 |
| SBS | Chr3 | 26663064 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 28541660 | T-G | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 30290524 | T-A | Hetero | INTRON | |
| SBS | Chr3 | 30400640 | A-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g319100 |
| SBS | Chr5 | 161708 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 11248922 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 277157 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 15827338 | T-A | Hetero | UTR_3_PRIME | |
| SBS | Chr10 | 9532780 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 12934959 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 12447591 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 15446001 | G-T | Homo | INTERGENIC | |
| SBS | Chr11 | 29108550 | T-A | Homo | INTERGENIC | |
| SBS | Chr12 | 7754287 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 15527612 | A-T | Homo | INTERGENIC | |
| SBS | Chr12 | 24555643 | G-T | Homo | INTRON | |
| SBS | Chr12 | 26826734 | C-A | Homo | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 3222150 | 3222153 | 3 | |
| Deletion | Chr8 | 6002673 | 6002675 | 2 | |
| Deletion | Chr5 | 6744424 | 6744430 | 6 | |
| Deletion | Chr11 | 9084475 | 9084489 | 14 | |
| Deletion | Chr5 | 12541194 | 12541679 | 485 | |
| Deletion | Chr4 | 13024226 | 13024227 | 1 | |
| Deletion | Chr8 | 13025001 | 13034000 | 8999 | |
| Deletion | Chr6 | 14037657 | 14037659 | 2 | |
| Deletion | Chr2 | 16353951 | 16353961 | 10 | |
| Deletion | Chr4 | 21175662 | 21175667 | 5 | |
| Deletion | Chr8 | 25166521 | 25166528 | 7 | |
| Deletion | Chr2 | 35992238 | 35992252 | 14 | OsKitaake02g378800 |
Insertions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 956937 | 956940 | 2 | |
| Insertion | Chr3 | 16374204 | 16374208 | 3 | |
| Insertion | Chr10 | 10407799 | 10407802 | 2 | |
| Insertion | Chr11 | 4030508 | 4030511 | 2 | |
| Insertion | Chr12 | 23794328 | 23794330 | 1 | |
| Insertion | Chr7 | 12248929 | 12248931 | 1 | |
| Insertion | Chr10 | 13525053 | 13525056 | 2 | OsKitaake10g081500  |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 16591481 | 17462842 | OsKitaake04g086600 |
| Inversion | Chr4 | 16591498 | 17462847 | OsKitaake04g086600 |