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Mutant Information

Mutant Name	FN620-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN620-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 47

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10807992 A-G Hetero INTERGENIC
SBS Chr1 11525623 G-T Hetero INTERGENIC
SBS Chr1 19259310 T-G Hetero INTERGENIC
SBS Chr1 42811398 C-T Hetero INTERGENIC
SBS Chr2 10196271 C-G Hetero INTERGENIC
SBS Chr2 10196272 C-G Hetero INTERGENIC
SBS Chr2 31794157 A-T Hetero INTRON
SBS Chr3 25112657 T-C Hetero INTERGENIC
SBS Chr3 25592930 A-G Hetero INTERGENIC
SBS Chr3 26292357 T-C Homo INTERGENIC
SBS Chr4 8509600 A-T Hetero INTERGENIC
SBS Chr4 8944271 G-T Hetero INTRON
SBS Chr4 8944273 A-T Hetero INTRON
SBS Chr4 14244117 T-C Hetero INTERGENIC
SBS Chr4 14252961 T-C Hetero INTERGENIC
SBS Chr4 15759169 G-A Homo INTERGENIC
SBS Chr4 19801038 G-A Hetero INTERGENIC
SBS Chr4 21380460 A-G Hetero INTERGENIC
SBS Chr5 2171422 A-C Hetero INTERGENIC
SBS Chr5 2171423 G-C Hetero INTERGENIC
SBS Chr5 13963896 G-A Hetero INTRON
SBS Chr6 10051067 G-A Hetero INTERGENIC
SBS Chr6 13373595 T-C Hetero INTERGENIC
SBS Chr6 24094178 T-A Hetero INTRON
SBS Chr7 471235 C-T Hetero INTERGENIC
SBS Chr7 14012960 A-T Hetero INTERGENIC
SBS Chr7 19345043 G-A Hetero INTERGENIC
SBS Chr8 7377963 C-G Hetero INTERGENIC
SBS Chr8 11685970 G-T Hetero INTERGENIC
SBS Chr8 27268485 A-G Homo UTR_5_PRIME
SBS Chr9 2768429 C-T Homo INTERGENIC
SBS Chr9 15196377 T-A Hetero INTERGENIC
SBS Chr9 15202047 C-A Hetero INTERGENIC
SBS Chr9 20109068 C-A Hetero SYNONYMOUS_CODING
SBS Chr10 1606085 T-A Hetero INTERGENIC
SBS Chr10 8842080 C-T Hetero INTERGENIC
SBS Chr10 9021935 T-A Hetero INTERGENIC
SBS Chr10 18219804 T-C Hetero INTERGENIC
SBS Chr10 20557212 C-T Homo INTRON
SBS Chr10 23346881 C-T Hetero INTERGENIC
SBS Chr12 2466803 A-G Hetero INTERGENIC
SBS Chr12 6548749 A-G Hetero UTR_3_PRIME
SBS Chr12 8574282 T-C Hetero INTERGENIC
SBS Chr12 9025456 C-T Hetero INTRON
SBS Chr12 14641488 G-A Hetero INTERGENIC
SBS Chr12 16392757 A-G Hetero INTERGENIC
SBS Chr12 20183504 C-G Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 2272549 2272551 2
Deletion Chr6 2562301 2562302 1
Deletion Chr10 4907182 4907184 2
Deletion Chr11 8255664 8255666 2
Deletion Chr3 8366597 8366598 1 OsKitaake03g115200
Deletion Chr3 11744172 11744173 1
Deletion Chr9 12843779 12843780 1
Deletion Chr11 14900946 14900947 1
Deletion Chr10 20832093 20832094 1
Deletion Chr6 22613821 22613822 1 OsKitaake06g199500
Deletion Chr3 26723421 26723423 2
Deletion Chr3 28312883 28312887 4
Deletion Chr3 31142525 31142527 2
Deletion Chr4 34547191 34547205 14

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 9928590 9928593 2
Insertion Chr11 22573288 22573290 1 OsKitaake11g179100
Insertion Chr12 3723578 3723581 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 17929891 18232133 2
Inversion Chr10 17929902 18232138 2
Inversion Chr3 25261736 25437104 OsKitaake03g268400
Inversion Chr3 25261742 25437108 OsKitaake03g268400

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 3707310 Chr5 1072523
Translocation Chr7 3707336 Chr5 1071179
Translocation Chr5 15040600 Chr2 31422082 OsKitaake02g321816
Translocation Chr5 15040609 Chr2 31422068 OsKitaake02g321816

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10807992	A-G	Hetero	INTERGENIC
SBS	Chr1	11525623	G-T	Hetero	INTERGENIC
SBS	Chr1	19259310	T-G	Hetero	INTERGENIC
SBS	Chr1	42811398	C-T	Hetero	INTERGENIC
SBS	Chr2	10196271	C-G	Hetero	INTERGENIC
SBS	Chr2	10196272	C-G	Hetero	INTERGENIC
SBS	Chr2	31794157	A-T	Hetero	INTRON
SBS	Chr3	25112657	T-C	Hetero	INTERGENIC
SBS	Chr3	25592930	A-G	Hetero	INTERGENIC
SBS	Chr3	26292357	T-C	Homo	INTERGENIC
SBS	Chr4	8509600	A-T	Hetero	INTERGENIC
SBS	Chr4	8944271	G-T	Hetero	INTRON
SBS	Chr4	8944273	A-T	Hetero	INTRON
SBS	Chr4	14244117	T-C	Hetero	INTERGENIC
SBS	Chr4	14252961	T-C	Hetero	INTERGENIC
SBS	Chr4	15759169	G-A	Homo	INTERGENIC
SBS	Chr4	19801038	G-A	Hetero	INTERGENIC
SBS	Chr4	21380460	A-G	Hetero	INTERGENIC
SBS	Chr5	2171422	A-C	Hetero	INTERGENIC
SBS	Chr5	2171423	G-C	Hetero	INTERGENIC
SBS	Chr5	13963896	G-A	Hetero	INTRON
SBS	Chr6	10051067	G-A	Hetero	INTERGENIC
SBS	Chr6	13373595	T-C	Hetero	INTERGENIC
SBS	Chr6	24094178	T-A	Hetero	INTRON
SBS	Chr7	471235	C-T	Hetero	INTERGENIC
SBS	Chr7	14012960	A-T	Hetero	INTERGENIC
SBS	Chr7	19345043	G-A	Hetero	INTERGENIC
SBS	Chr8	7377963	C-G	Hetero	INTERGENIC
SBS	Chr8	11685970	G-T	Hetero	INTERGENIC
SBS	Chr8	27268485	A-G	Homo	UTR_5_PRIME
SBS	Chr9	2768429	C-T	Homo	INTERGENIC
SBS	Chr9	15196377	T-A	Hetero	INTERGENIC
SBS	Chr9	15202047	C-A	Hetero	INTERGENIC
SBS	Chr9	20109068	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr10	1606085	T-A	Hetero	INTERGENIC
SBS	Chr10	8842080	C-T	Hetero	INTERGENIC
SBS	Chr10	9021935	T-A	Hetero	INTERGENIC
SBS	Chr10	18219804	T-C	Hetero	INTERGENIC
SBS	Chr10	20557212	C-T	Homo	INTRON
SBS	Chr10	23346881	C-T	Hetero	INTERGENIC
SBS	Chr12	2466803	A-G	Hetero	INTERGENIC
SBS	Chr12	6548749	A-G	Hetero	UTR_3_PRIME
SBS	Chr12	8574282	T-C	Hetero	INTERGENIC
SBS	Chr12	9025456	C-T	Hetero	INTRON
SBS	Chr12	14641488	G-A	Hetero	INTERGENIC
SBS	Chr12	16392757	A-G	Hetero	INTERGENIC
SBS	Chr12	20183504	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	2272549	2272551	2
Deletion	Chr6	2562301	2562302	1
Deletion	Chr10	4907182	4907184	2
Deletion	Chr11	8255664	8255666	2
Deletion	Chr3	8366597	8366598	1	OsKitaake03g115200
Deletion	Chr3	11744172	11744173	1
Deletion	Chr9	12843779	12843780	1
Deletion	Chr11	14900946	14900947	1
Deletion	Chr10	20832093	20832094	1
Deletion	Chr6	22613821	22613822	1	OsKitaake06g199500
Deletion	Chr3	26723421	26723423	2
Deletion	Chr3	28312883	28312887	4
Deletion	Chr3	31142525	31142527	2
Deletion	Chr4	34547191	34547205	14

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	17929891	18232133	2
Inversion	Chr10	17929902	18232138	2
Inversion	Chr3	25261736	25437104	OsKitaake03g268400
Inversion	Chr3	25261742	25437108	OsKitaake03g268400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes