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Mutant Information

Mutant Name	FN621-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN621-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2078783 C-T Hetero START_GAINED
SBS Chr2 15543360 A-T Hetero INTERGENIC
SBS Chr2 16155866 G-A Hetero INTERGENIC
SBS Chr2 19538199 T-A Hetero INTERGENIC
SBS Chr2 21620387 T-A Hetero INTERGENIC
SBS Chr2 28069250 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g283000
SBS Chr3 2072397 T-A Hetero INTERGENIC
SBS Chr3 19293397 C-T Hetero INTERGENIC
SBS Chr3 23810527 C-T Hetero INTERGENIC
SBS Chr4 7346004 G-A Hetero INTERGENIC
SBS Chr4 12030856 G-T Homo INTERGENIC
SBS Chr4 12745773 G-A Homo INTRON
SBS Chr4 12745774 T-A Homo INTRON
SBS Chr4 14748292 C-G Hetero INTERGENIC
SBS Chr4 20207546 A-G Hetero INTERGENIC
SBS Chr5 1357383 T-C Homo INTRON
SBS Chr5 9020466 C-T Homo INTERGENIC
SBS Chr5 12997798 C-A Hetero INTERGENIC
SBS Chr5 14766137 C-T Hetero INTRON
SBS Chr5 24008335 C-A Hetero INTERGENIC
SBS Chr5 28064310 A-T Hetero INTERGENIC
SBS Chr6 6048506 A-T Hetero INTERGENIC
SBS Chr6 11664732 G-A Homo INTERGENIC
SBS Chr7 2590413 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g034100
SBS Chr8 5076216 C-A Hetero INTERGENIC
SBS Chr8 8273452 C-T Homo INTERGENIC
SBS Chr8 13069696 C-T Homo INTERGENIC
SBS Chr8 14283761 G-A Homo INTERGENIC
SBS Chr8 21030613 G-A Hetero INTERGENIC
SBS Chr8 26817959 A-C Hetero INTRON
SBS Chr9 6809365 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g039000
SBS Chr9 8133154 G-A Hetero INTERGENIC
SBS Chr9 16079248 G-A Homo INTERGENIC
SBS Chr9 18708454 C-T Hetero INTERGENIC
SBS Chr11 2602669 C-A Homo INTERGENIC
SBS Chr11 6828834 A-G Hetero INTERGENIC
SBS Chr11 18518403 G-T Homo UTR_3_PRIME
SBS Chr11 27862159 C-T Homo UTR_5_PRIME
SBS Chr12 1670345 A-T Homo INTRON
SBS Chr12 11134910 A-C Homo INTERGENIC
SBS Chr12 25787534 T-A Hetero SYNONYMOUS_CODING
SBS Chr12 25787535 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake12g213300

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1514001 1550000 35999 7
Deletion Chr6 4233108 4233109 1
Deletion Chr4 10236691 10236696 5
Deletion Chr3 10281039 10281044 5
Deletion Chr11 10787711 10787821 110
Deletion Chr9 16079474 16079476 2
Deletion Chr9 16123829 16123853 24
Deletion Chr12 19496714 19496716 2
Deletion Chr6 20098250 20098317 67
Deletion Chr5 20681733 20681734 1
Deletion Chr2 20949217 20949220 3
Deletion Chr11 28016001 28024000 7999
Deletion Chr6 28199912 28199913 1
Deletion Chr3 29894336 29894339 3 OsKitaake03g312600
Deletion Chr4 35953295 35953296 1 OsKitaake04g308600
Deletion Chr4 36635621 36635628 7

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 23591868 23591871 2
Insertion Chr6 12469934 12469936 1
Insertion Chr9 14408820 14408823 2
Insertion Chr10 2281114 2281117 2
Insertion Chr11 26884024 26884027 2
Insertion Chr1 8263843 8263846 2
Insertion Chr3 8671974 8671978 3
Insertion Chr4 10143274 10143276 1

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 10379736 Chr8 2924897 OsKitaake08g032200
Translocation Chr5 16087043 Chr4 12032533 OsKitaake05g123400
Translocation Chr5 16087294 Chr4 12032525 OsKitaake05g123400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2078783	C-T	Hetero	START_GAINED
SBS	Chr2	15543360	A-T	Hetero	INTERGENIC
SBS	Chr2	16155866	G-A	Hetero	INTERGENIC
SBS	Chr2	19538199	T-A	Hetero	INTERGENIC
SBS	Chr2	21620387	T-A	Hetero	INTERGENIC
SBS	Chr2	28069250	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g283000
SBS	Chr3	2072397	T-A	Hetero	INTERGENIC
SBS	Chr3	19293397	C-T	Hetero	INTERGENIC
SBS	Chr3	23810527	C-T	Hetero	INTERGENIC
SBS	Chr4	7346004	G-A	Hetero	INTERGENIC
SBS	Chr4	12030856	G-T	Homo	INTERGENIC
SBS	Chr4	12745773	G-A	Homo	INTRON
SBS	Chr4	12745774	T-A	Homo	INTRON
SBS	Chr4	14748292	C-G	Hetero	INTERGENIC
SBS	Chr4	20207546	A-G	Hetero	INTERGENIC
SBS	Chr5	1357383	T-C	Homo	INTRON
SBS	Chr5	9020466	C-T	Homo	INTERGENIC
SBS	Chr5	12997798	C-A	Hetero	INTERGENIC
SBS	Chr5	14766137	C-T	Hetero	INTRON
SBS	Chr5	24008335	C-A	Hetero	INTERGENIC
SBS	Chr5	28064310	A-T	Hetero	INTERGENIC
SBS	Chr6	6048506	A-T	Hetero	INTERGENIC
SBS	Chr6	11664732	G-A	Homo	INTERGENIC
SBS	Chr7	2590413	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g034100
SBS	Chr8	5076216	C-A	Hetero	INTERGENIC
SBS	Chr8	8273452	C-T	Homo	INTERGENIC
SBS	Chr8	13069696	C-T	Homo	INTERGENIC
SBS	Chr8	14283761	G-A	Homo	INTERGENIC
SBS	Chr8	21030613	G-A	Hetero	INTERGENIC
SBS	Chr8	26817959	A-C	Hetero	INTRON
SBS	Chr9	6809365	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g039000
SBS	Chr9	8133154	G-A	Hetero	INTERGENIC
SBS	Chr9	16079248	G-A	Homo	INTERGENIC
SBS	Chr9	18708454	C-T	Hetero	INTERGENIC
SBS	Chr11	2602669	C-A	Homo	INTERGENIC
SBS	Chr11	6828834	A-G	Hetero	INTERGENIC
SBS	Chr11	18518403	G-T	Homo	UTR_3_PRIME
SBS	Chr11	27862159	C-T	Homo	UTR_5_PRIME
SBS	Chr12	1670345	A-T	Homo	INTRON
SBS	Chr12	11134910	A-C	Homo	INTERGENIC
SBS	Chr12	25787534	T-A	Hetero	SYNONYMOUS_CODING
SBS	Chr12	25787535	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g213300

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1514001	1550000	35999	7
Deletion	Chr6	4233108	4233109	1
Deletion	Chr4	10236691	10236696	5
Deletion	Chr3	10281039	10281044	5
Deletion	Chr11	10787711	10787821	110
Deletion	Chr9	16079474	16079476	2
Deletion	Chr9	16123829	16123853	24
Deletion	Chr12	19496714	19496716	2
Deletion	Chr6	20098250	20098317	67
Deletion	Chr5	20681733	20681734	1
Deletion	Chr2	20949217	20949220	3
Deletion	Chr11	28016001	28024000	7999
Deletion	Chr6	28199912	28199913	1
Deletion	Chr3	29894336	29894339	3	OsKitaake03g312600
Deletion	Chr4	35953295	35953296	1	OsKitaake04g308600
Deletion	Chr4	36635621	36635628	7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	10379736	Chr8	2924897	OsKitaake08g032200
Translocation	Chr5	16087043	Chr4	12032533	OsKitaake05g123400
Translocation	Chr5	16087294	Chr4	12032525	OsKitaake05g123400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes