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Mutant Information

Mutant Name	FN622-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN622-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6571401 A-T Homo INTERGENIC
SBS Chr1 27571116 G-A Hetero INTERGENIC
SBS Chr1 30126311 G-C Hetero INTRON
SBS Chr1 30384173 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g300100
SBS Chr1 32637105 G-T Hetero INTERGENIC
SBS Chr2 6563157 T-A Hetero INTERGENIC
SBS Chr2 7664740 C-A Hetero INTERGENIC
SBS Chr2 15204601 C-G Hetero INTERGENIC
SBS Chr2 18981940 A-G Hetero INTERGENIC
SBS Chr2 21015623 A-C Hetero INTERGENIC
SBS Chr2 36783475 T-A Hetero INTERGENIC
SBS Chr3 1410953 C-T Hetero INTERGENIC
SBS Chr3 20742247 C-T Hetero INTERGENIC
SBS Chr3 20933755 C-T Homo INTERGENIC
SBS Chr4 8433024 A-G Homo INTERGENIC
SBS Chr4 22903151 G-A Hetero INTERGENIC
SBS Chr4 27608714 T-C Homo INTERGENIC
SBS Chr4 29725651 T-A Hetero INTRON
SBS Chr4 29864436 G-A Hetero INTERGENIC
SBS Chr5 2015096 T-G Hetero UTR_5_PRIME
SBS Chr5 19037344 A-C Hetero INTERGENIC
SBS Chr6 9992572 G-T Homo INTERGENIC
SBS Chr6 9992573 A-T Homo INTERGENIC
SBS Chr6 9992574 C-T Homo INTERGENIC
SBS Chr6 10745186 G-C Hetero INTERGENIC
SBS Chr6 14370120 A-T Hetero INTERGENIC
SBS Chr6 22798291 C-A Hetero INTRON
SBS Chr6 24793457 T-C Hetero INTERGENIC
SBS Chr6 27970155 G-T Hetero INTERGENIC
SBS Chr7 25801401 T-A Homo INTERGENIC
SBS Chr8 5594460 T-A Hetero INTERGENIC
SBS Chr8 22856546 C-T Hetero INTERGENIC
SBS Chr8 24292012 A-T Homo INTERGENIC
SBS Chr9 20022669 T-C Homo INTERGENIC
SBS Chr10 688071 C-T Homo INTRON
SBS Chr10 6377727 T-C Hetero INTERGENIC
SBS Chr10 12014564 G-A Hetero INTERGENIC
SBS Chr11 323268 T-A Homo INTERGENIC
SBS Chr11 7225591 G-A Hetero INTERGENIC
SBS Chr12 11397943 A-T Homo INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 10450844 10450854 10
Deletion Chr2 14267708 14267712 4
Deletion Chr4 14344764 14344769 5
Deletion Chr9 15923319 15923321 2
Deletion Chr12 19600589 19600591 2
Deletion Chr3 21217453 21217454 1
Deletion Chr7 23619129 23619134 5
Deletion Chr3 26179217 26179223 6
Deletion Chr12 26559563 26559568 5
Deletion Chr2 34635974 34635976 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 16372008 16372011 2
Insertion Chr12 22584198 22584201 2
Insertion Chr5 30230376 30230384 7

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 1623656 Chr5 9478906 OsKitaake05g087201
Translocation Chr8 1623684 Chr5 9477120 OsKitaake05g087201
Translocation Chr9 20623475 Chr2 25288881

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6571401	A-T	Homo	INTERGENIC
SBS	Chr1	27571116	G-A	Hetero	INTERGENIC
SBS	Chr1	30126311	G-C	Hetero	INTRON
SBS	Chr1	30384173	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g300100
SBS	Chr1	32637105	G-T	Hetero	INTERGENIC
SBS	Chr2	6563157	T-A	Hetero	INTERGENIC
SBS	Chr2	7664740	C-A	Hetero	INTERGENIC
SBS	Chr2	15204601	C-G	Hetero	INTERGENIC
SBS	Chr2	18981940	A-G	Hetero	INTERGENIC
SBS	Chr2	21015623	A-C	Hetero	INTERGENIC
SBS	Chr2	36783475	T-A	Hetero	INTERGENIC
SBS	Chr3	1410953	C-T	Hetero	INTERGENIC
SBS	Chr3	20742247	C-T	Hetero	INTERGENIC
SBS	Chr3	20933755	C-T	Homo	INTERGENIC
SBS	Chr4	8433024	A-G	Homo	INTERGENIC
SBS	Chr4	22903151	G-A	Hetero	INTERGENIC
SBS	Chr4	27608714	T-C	Homo	INTERGENIC
SBS	Chr4	29725651	T-A	Hetero	INTRON
SBS	Chr4	29864436	G-A	Hetero	INTERGENIC
SBS	Chr5	2015096	T-G	Hetero	UTR_5_PRIME
SBS	Chr5	19037344	A-C	Hetero	INTERGENIC
SBS	Chr6	9992572	G-T	Homo	INTERGENIC
SBS	Chr6	9992573	A-T	Homo	INTERGENIC
SBS	Chr6	9992574	C-T	Homo	INTERGENIC
SBS	Chr6	10745186	G-C	Hetero	INTERGENIC
SBS	Chr6	14370120	A-T	Hetero	INTERGENIC
SBS	Chr6	22798291	C-A	Hetero	INTRON
SBS	Chr6	24793457	T-C	Hetero	INTERGENIC
SBS	Chr6	27970155	G-T	Hetero	INTERGENIC
SBS	Chr7	25801401	T-A	Homo	INTERGENIC
SBS	Chr8	5594460	T-A	Hetero	INTERGENIC
SBS	Chr8	22856546	C-T	Hetero	INTERGENIC
SBS	Chr8	24292012	A-T	Homo	INTERGENIC
SBS	Chr9	20022669	T-C	Homo	INTERGENIC
SBS	Chr10	688071	C-T	Homo	INTRON
SBS	Chr10	6377727	T-C	Hetero	INTERGENIC
SBS	Chr10	12014564	G-A	Hetero	INTERGENIC
SBS	Chr11	323268	T-A	Homo	INTERGENIC
SBS	Chr11	7225591	G-A	Hetero	INTERGENIC
SBS	Chr12	11397943	A-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	10450844	10450854	10
Deletion	Chr2	14267708	14267712	4
Deletion	Chr4	14344764	14344769	5
Deletion	Chr9	15923319	15923321	2
Deletion	Chr12	19600589	19600591	2
Deletion	Chr3	21217453	21217454	1
Deletion	Chr7	23619129	23619134	5
Deletion	Chr3	26179217	26179223	6
Deletion	Chr12	26559563	26559568	5
Deletion	Chr2	34635974	34635976	2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	1623656	Chr5	9478906	OsKitaake05g087201
Translocation	Chr8	1623684	Chr5	9477120	OsKitaake05g087201
Translocation	Chr9	20623475	Chr2	25288881

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes