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Mutant Information

Mutant Name	FN623-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN623-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12608886 C-T Hetero INTERGENIC
SBS Chr1 20037113 A-T Homo INTERGENIC
SBS Chr1 21198371 T-C Homo INTERGENIC
SBS Chr1 21551880 T-A Homo INTERGENIC
SBS Chr2 1401912 G-A Homo INTERGENIC
SBS Chr2 16547431 G-A Homo INTERGENIC
SBS Chr3 736406 C-T Homo INTERGENIC
SBS Chr3 736408 A-G Homo INTERGENIC
SBS Chr3 10527831 T-C Homo UTR_3_PRIME
SBS Chr3 11189404 T-A Hetero INTERGENIC
SBS Chr3 19225004 C-G Homo INTERGENIC
SBS Chr3 22697228 T-G Homo INTERGENIC
SBS Chr6 13450172 G-A Homo INTRON
SBS Chr7 2449133 T-G Homo INTERGENIC
SBS Chr7 7174965 C-T Hetero INTERGENIC
SBS Chr8 5085492 G-A Homo INTERGENIC
SBS Chr8 9991846 T-G Hetero INTERGENIC
SBS Chr8 11303626 G-A Homo INTERGENIC
SBS Chr9 16976840 C-T Homo INTERGENIC
SBS Chr10 3787333 T-A Homo INTERGENIC
SBS Chr10 10331451 A-G Hetero INTERGENIC
SBS Chr10 23639929 C-A Hetero INTERGENIC
SBS Chr12 7718289 C-A Hetero INTERGENIC
SBS Chr12 25441943 T-A Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 392767 392772 5
Deletion Chr3 563998 563999 1
Deletion Chr9 610014 610015 1
Deletion Chr5 3467605 3467614 9
Deletion Chr9 8173865 8173866 1
Deletion Chr8 9775742 9775755 13
Deletion Chr4 15304072 15304074 2
Deletion Chr7 22588681 22588749 68
Deletion Chr1 28577653 28577655 2
Deletion Chr2 35356115 35356125 10

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 17748028 17748033 4
Insertion Chr5 13520680 13520683 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 9750502 10003495
Inversion Chr8 9752671 10001142 OsKitaake08g091500

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 8658993 Chr1 17293163 OsKitaake10g053166

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12608886	C-T	Hetero	INTERGENIC
SBS	Chr1	20037113	A-T	Homo	INTERGENIC
SBS	Chr1	21198371	T-C	Homo	INTERGENIC
SBS	Chr1	21551880	T-A	Homo	INTERGENIC
SBS	Chr2	1401912	G-A	Homo	INTERGENIC
SBS	Chr2	16547431	G-A	Homo	INTERGENIC
SBS	Chr3	736406	C-T	Homo	INTERGENIC
SBS	Chr3	736408	A-G	Homo	INTERGENIC
SBS	Chr3	10527831	T-C	Homo	UTR_3_PRIME
SBS	Chr3	11189404	T-A	Hetero	INTERGENIC
SBS	Chr3	19225004	C-G	Homo	INTERGENIC
SBS	Chr3	22697228	T-G	Homo	INTERGENIC
SBS	Chr6	13450172	G-A	Homo	INTRON
SBS	Chr7	2449133	T-G	Homo	INTERGENIC
SBS	Chr7	7174965	C-T	Hetero	INTERGENIC
SBS	Chr8	5085492	G-A	Homo	INTERGENIC
SBS	Chr8	9991846	T-G	Hetero	INTERGENIC
SBS	Chr8	11303626	G-A	Homo	INTERGENIC
SBS	Chr9	16976840	C-T	Homo	INTERGENIC
SBS	Chr10	3787333	T-A	Homo	INTERGENIC
SBS	Chr10	10331451	A-G	Hetero	INTERGENIC
SBS	Chr10	23639929	C-A	Hetero	INTERGENIC
SBS	Chr12	7718289	C-A	Hetero	INTERGENIC
SBS	Chr12	25441943	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	392767	392772	5
Deletion	Chr3	563998	563999	1
Deletion	Chr9	610014	610015	1
Deletion	Chr5	3467605	3467614	9
Deletion	Chr9	8173865	8173866	1
Deletion	Chr8	9775742	9775755	13
Deletion	Chr4	15304072	15304074	2
Deletion	Chr7	22588681	22588749	68
Deletion	Chr1	28577653	28577655	2
Deletion	Chr2	35356115	35356125	10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	9750502	10003495
Inversion	Chr8	9752671	10001142	OsKitaake08g091500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes