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| Mutant Information |
|---|
| Mutant Name | FN625-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN625-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 10346534 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 21073819 | G-T | Homo | INTERGENIC | |
| SBS | Chr1 | 36729448 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr2 | 5873307 | T-G | Homo | INTERGENIC | |
| SBS | Chr2 | 24905766 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 29445220 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 29445221 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 31996017 | T-C | Homo | SYNONYMOUS_CODING | |
| SBS | Chr3 | 6023253 | C-A | Homo | INTERGENIC | |
| SBS | Chr3 | 12473667 | A-T | Hetero | INTRON | |
| SBS | Chr3 | 21739820 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 26812817 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 34678599 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g377400 |
| SBS | Chr4 | 5136911 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr4 | 25754183 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g178900 |
| SBS | Chr4 | 26239551 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 13165623 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 3666127 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 7404544 | C-A | Homo | UTR_3_PRIME | |
| SBS | Chr6 | 16237414 | T-A | Homo | INTERGENIC | |
| SBS | Chr6 | 16965949 | T-A | Homo | INTRON | |
| SBS | Chr6 | 25360754 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 30031334 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr6 | 30992231 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 27769854 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g259300 |
| SBS | Chr8 | 9013235 | G-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr9 | 5346576 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 9581209 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 2038524 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 2038531 | G-A | Homo | INTERGENIC |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 88990 | 88991 | 1 | |
| Deletion | Chr12 | 1343112 | 1343113 | 1 | |
| Deletion | Chr11 | 1937040 | 1937043 | 3 | |
| Deletion | Chr8 | 3785905 | 3785906 | 1 | |
| Deletion | Chr4 | 8229911 | 8229912 | 1 | |
| Deletion | Chr7 | 10587506 | 10587523 | 17 | |
| Deletion | Chr9 | 11038302 | 11038303 | 1 | |
| Deletion | Chr11 | 11347910 | 11347912 | 2 | |
| Deletion | Chr3 | 14495035 | 14495037 | 2 | |
| Deletion | Chr1 | 18319526 | 18319528 | 2 | |
| Deletion | Chr3 | 20035146 | 20035300 | 154 | |
| Deletion | Chr1 | 23361442 | 23361443 | 1 | OsKitaake01g223500 |
| Deletion | Chr1 | 26985677 | 26985680 | 3 | |
| Deletion | Chr5 | 30099171 | 30099176 | 5 | |
| Deletion | Chr2 | 36578084 | 36578086 | 2 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 13448796 | 13448799 | 2 | |
| Insertion | Chr7 | 15393560 | 15393563 | 2 | |
| Insertion | Chr8 | 27257524 | 27257527 | 2 | |
| Insertion | Chr5 | 15424490 | 15424492 | 1 | OsKitaake05g118300  |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr3 | 1647023 | Chr1 | 21366581 | OsKitaake03g023200 |
| Translocation | Chr3 | 1647026 | Chr1 | 21368856 | OsKitaake03g023200 |