Search Kitaake

Mutant Information

Mutant Name	FN626-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN626-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16113507 T-G Homo INTERGENIC
SBS Chr1 17932232 C-T Homo INTERGENIC
SBS Chr2 6674102 T-C Hetero INTERGENIC
SBS Chr2 23007981 T-A Homo INTERGENIC
SBS Chr2 23766973 G-A Homo INTERGENIC
SBS Chr2 33912444 A-C Hetero INTERGENIC
SBS Chr3 29596339 G-A Homo INTERGENIC
SBS Chr3 34195643 G-C Homo INTERGENIC
SBS Chr4 2183053 A-G Homo INTERGENIC
SBS Chr4 34183937 C-A Homo INTERGENIC
SBS Chr5 835290 C-T Hetero INTERGENIC
SBS Chr5 17291809 A-T Hetero INTERGENIC
SBS Chr6 25313145 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake06g224400
SBS Chr7 9921839 T-A Hetero INTERGENIC
SBS Chr7 16102493 C-T Hetero INTERGENIC
SBS Chr7 26304598 T-C Hetero INTRON
SBS Chr8 9741928 A-T Hetero INTERGENIC
SBS Chr8 10407563 C-T Hetero INTERGENIC
SBS Chr8 12728875 C-T Hetero INTERGENIC
SBS Chr8 15335975 C-A Hetero INTERGENIC
SBS Chr8 23803204 C-A Hetero INTERGENIC
SBS Chr9 4017730 C-G Homo INTERGENIC
SBS Chr9 12619259 T-C Hetero INTERGENIC
SBS Chr9 20410380 G-A Hetero INTERGENIC
SBS Chr10 3060277 A-C Hetero INTERGENIC
SBS Chr10 10655577 G-A Hetero INTERGENIC
SBS Chr10 14762841 C-G Hetero INTERGENIC
SBS Chr11 13986517 G-A Hetero INTERGENIC
SBS Chr11 18787465 G-A Hetero INTRON

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 88291 88645 354
Deletion Chr8 242027 242028 1
Deletion Chr3 409104 409106 2
Deletion Chr9 3542354 3542355 1
Deletion Chr7 6010332 6010333 1
Deletion Chr8 6159237 6159246 9
Deletion Chr11 9152920 9152921 1
Deletion Chr6 9653219 9653220 1
Deletion Chr6 9917042 9917052 10
Deletion Chr12 13511445 13511447 2
Deletion Chr9 14053567 14053605 38
Deletion Chr4 17722892 17722893 1
Deletion Chr2 22898775 22898779 4
Deletion Chr3 28937472 28937486 14
Deletion Chr3 32379635 32379636 1
Deletion Chr3 32544726 32544733 7

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 36274001 36274004 2
Insertion Chr3 36082270 36082273 2
Insertion Chr5 26912875 26912878 2
Insertion Chr6 30783569 30783572 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 6490227 6895856 2
Inversion Chr6 6490236 6896912 OsKitaake06g084700
Inversion Chr1 8191671 8248819 OsKitaake01g102200
Inversion Chr1 8191687 8248838 OsKitaake01g102200

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 1185433 Chr3 29186419 2
Translocation Chr7 1185771 Chr3 29186409 2
Translocation Chr3 10755616 Chr1 33914338
Translocation Chr3 10756011 Chr1 33914338 OsKitaake03g148000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16113507	T-G	Homo	INTERGENIC
SBS	Chr1	17932232	C-T	Homo	INTERGENIC
SBS	Chr2	6674102	T-C	Hetero	INTERGENIC
SBS	Chr2	23007981	T-A	Homo	INTERGENIC
SBS	Chr2	23766973	G-A	Homo	INTERGENIC
SBS	Chr2	33912444	A-C	Hetero	INTERGENIC
SBS	Chr3	29596339	G-A	Homo	INTERGENIC
SBS	Chr3	34195643	G-C	Homo	INTERGENIC
SBS	Chr4	2183053	A-G	Homo	INTERGENIC
SBS	Chr4	34183937	C-A	Homo	INTERGENIC
SBS	Chr5	835290	C-T	Hetero	INTERGENIC
SBS	Chr5	17291809	A-T	Hetero	INTERGENIC
SBS	Chr6	25313145	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g224400
SBS	Chr7	9921839	T-A	Hetero	INTERGENIC
SBS	Chr7	16102493	C-T	Hetero	INTERGENIC
SBS	Chr7	26304598	T-C	Hetero	INTRON
SBS	Chr8	9741928	A-T	Hetero	INTERGENIC
SBS	Chr8	10407563	C-T	Hetero	INTERGENIC
SBS	Chr8	12728875	C-T	Hetero	INTERGENIC
SBS	Chr8	15335975	C-A	Hetero	INTERGENIC
SBS	Chr8	23803204	C-A	Hetero	INTERGENIC
SBS	Chr9	4017730	C-G	Homo	INTERGENIC
SBS	Chr9	12619259	T-C	Hetero	INTERGENIC
SBS	Chr9	20410380	G-A	Hetero	INTERGENIC
SBS	Chr10	3060277	A-C	Hetero	INTERGENIC
SBS	Chr10	10655577	G-A	Hetero	INTERGENIC
SBS	Chr10	14762841	C-G	Hetero	INTERGENIC
SBS	Chr11	13986517	G-A	Hetero	INTERGENIC
SBS	Chr11	18787465	G-A	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	88291	88645	354
Deletion	Chr8	242027	242028	1
Deletion	Chr3	409104	409106	2
Deletion	Chr9	3542354	3542355	1
Deletion	Chr7	6010332	6010333	1
Deletion	Chr8	6159237	6159246	9
Deletion	Chr11	9152920	9152921	1
Deletion	Chr6	9653219	9653220	1
Deletion	Chr6	9917042	9917052	10
Deletion	Chr12	13511445	13511447	2
Deletion	Chr9	14053567	14053605	38
Deletion	Chr4	17722892	17722893	1
Deletion	Chr2	22898775	22898779	4
Deletion	Chr3	28937472	28937486	14
Deletion	Chr3	32379635	32379636	1
Deletion	Chr3	32544726	32544733	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	6490227	6895856	2
Inversion	Chr6	6490236	6896912	OsKitaake06g084700
Inversion	Chr1	8191671	8248819	OsKitaake01g102200
Inversion	Chr1	8191687	8248838	OsKitaake01g102200

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes