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Mutant Information

Mutant Name	FN627-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN627-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 24451053 C-A Homo INTERGENIC
SBS Chr1 24451055 T-C Homo INTERGENIC
SBS Chr1 37701958 T-C Hetero INTERGENIC
SBS Chr2 12311546 C-T Homo INTERGENIC
SBS Chr3 161370 G-C Hetero INTERGENIC
SBS Chr3 23153046 G-A Homo INTERGENIC
SBS Chr3 30050969 G-A Hetero INTERGENIC
SBS Chr5 2658290 A-T Homo INTERGENIC
SBS Chr5 2764240 C-A Homo INTERGENIC
SBS Chr5 12152179 C-T Homo INTERGENIC
SBS Chr5 24957966 A-G Hetero INTERGENIC
SBS Chr6 225406 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g001200
SBS Chr6 225407 A-C Hetero SYNONYMOUS_CODING
SBS Chr6 7100758 C-T Homo INTERGENIC
SBS Chr6 18340401 T-A Hetero INTERGENIC
SBS Chr6 29739614 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g277800
SBS Chr8 6615768 G-A Hetero INTERGENIC
SBS Chr8 6615789 C-T Hetero INTERGENIC
SBS Chr8 12155060 G-A Homo INTERGENIC
SBS Chr9 3986787 G-A Homo SYNONYMOUS_CODING
SBS Chr9 5613852 G-C Homo INTERGENIC
SBS Chr9 7943908 C-T Homo INTERGENIC
SBS Chr9 22632787 G-A Homo INTERGENIC
SBS Chr10 13016602 T-C Homo INTERGENIC
SBS Chr10 17360899 C-G Hetero INTERGENIC
SBS Chr10 17387018 A-C Hetero INTERGENIC
SBS Chr11 723288 C-T Hetero INTERGENIC
SBS Chr11 9874830 A-G Hetero INTERGENIC
SBS Chr11 10375549 G-A Hetero INTERGENIC
SBS Chr11 13038358 T-G Hetero INTERGENIC
SBS Chr11 13815240 C-T Hetero INTERGENIC
SBS Chr11 20408661 T-C Hetero UTR_3_PRIME
SBS Chr12 3730977 T-A Hetero INTRON
SBS Chr12 6092134 A-T Homo INTERGENIC
SBS Chr12 9893007 C-G Hetero INTERGENIC
SBS Chr12 19789975 G-A Homo INTERGENIC

Deletions: 25

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 231001 256000 24999 5
Deletion Chr7 1579631 1579635 4
Deletion Chr5 5930631 5930632 1
Deletion Chr7 7422331 7422333 2
Deletion Chr7 8301454 8301456 2
Deletion Chr2 9279415 9279418 3
Deletion Chr12 11657933 11658552 619
Deletion Chr10 13016438 13016454 16
Deletion Chr5 13622001 13642000 19999 OsKitaake05g105601
Deletion Chr6 16688001 16757000 68999 4
Deletion Chr1 17403714 17403722 8
Deletion Chr6 19410993 19410994 1
Deletion Chr4 19686162 19686165 3
Deletion Chr2 20399921 20399929 8 OsKitaake02g198800
Deletion Chr1 22640235 22640238 3
Deletion Chr7 23723246 23723264 18
Deletion Chr6 24301382 24301389 7
Deletion Chr1 24767887 24767896 9
Deletion Chr1 25536974 25536975 1
Deletion Chr7 25934535 25934536 1
Deletion Chr1 30238332 30238333 1
Deletion Chr1 30825857 30825859 2
Deletion Chr4 33265345 33265351 6 OsKitaake04g271800
Deletion Chr4 33330680 33330681 1
Deletion Chr1 33786028 33786033 5

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 26898319 26898322 2
Insertion Chr8 3379517 3379520 2
Insertion Chr9 14860235 14860238 2
Insertion Chr10 12250585 12250588 2
Insertion Chr8 2510172 2510174 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 253562 841017 OsKitaake06g001800
Inversion Chr12 10693329 10714313
Inversion Chr7 14334870 14654341
Inversion Chr7 14334873 14654341

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 839321 Chr4 5873748 OsKitaake04g029300
Translocation Chr6 841011 Chr4 5873744 OsKitaake04g029300
Translocation Chr7 3264107 Chr3 31316530 OsKitaake03g329600
Translocation Chr7 3264120 Chr3 31313861 OsKitaake03g329600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24451053	C-A	Homo	INTERGENIC
SBS	Chr1	24451055	T-C	Homo	INTERGENIC
SBS	Chr1	37701958	T-C	Hetero	INTERGENIC
SBS	Chr2	12311546	C-T	Homo	INTERGENIC
SBS	Chr3	161370	G-C	Hetero	INTERGENIC
SBS	Chr3	23153046	G-A	Homo	INTERGENIC
SBS	Chr3	30050969	G-A	Hetero	INTERGENIC
SBS	Chr5	2658290	A-T	Homo	INTERGENIC
SBS	Chr5	2764240	C-A	Homo	INTERGENIC
SBS	Chr5	12152179	C-T	Homo	INTERGENIC
SBS	Chr5	24957966	A-G	Hetero	INTERGENIC
SBS	Chr6	225406	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g001200
SBS	Chr6	225407	A-C	Hetero	SYNONYMOUS_CODING
SBS	Chr6	7100758	C-T	Homo	INTERGENIC
SBS	Chr6	18340401	T-A	Hetero	INTERGENIC
SBS	Chr6	29739614	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g277800
SBS	Chr8	6615768	G-A	Hetero	INTERGENIC
SBS	Chr8	6615789	C-T	Hetero	INTERGENIC
SBS	Chr8	12155060	G-A	Homo	INTERGENIC
SBS	Chr9	3986787	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr9	5613852	G-C	Homo	INTERGENIC
SBS	Chr9	7943908	C-T	Homo	INTERGENIC
SBS	Chr9	22632787	G-A	Homo	INTERGENIC
SBS	Chr10	13016602	T-C	Homo	INTERGENIC
SBS	Chr10	17360899	C-G	Hetero	INTERGENIC
SBS	Chr10	17387018	A-C	Hetero	INTERGENIC
SBS	Chr11	723288	C-T	Hetero	INTERGENIC
SBS	Chr11	9874830	A-G	Hetero	INTERGENIC
SBS	Chr11	10375549	G-A	Hetero	INTERGENIC
SBS	Chr11	13038358	T-G	Hetero	INTERGENIC
SBS	Chr11	13815240	C-T	Hetero	INTERGENIC
SBS	Chr11	20408661	T-C	Hetero	UTR_3_PRIME
SBS	Chr12	3730977	T-A	Hetero	INTRON
SBS	Chr12	6092134	A-T	Homo	INTERGENIC
SBS	Chr12	9893007	C-G	Hetero	INTERGENIC
SBS	Chr12	19789975	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	231001	256000	24999	5
Deletion	Chr7	1579631	1579635	4
Deletion	Chr5	5930631	5930632	1
Deletion	Chr7	7422331	7422333	2
Deletion	Chr7	8301454	8301456	2
Deletion	Chr2	9279415	9279418	3
Deletion	Chr12	11657933	11658552	619
Deletion	Chr10	13016438	13016454	16
Deletion	Chr5	13622001	13642000	19999	OsKitaake05g105601
Deletion	Chr6	16688001	16757000	68999	4
Deletion	Chr1	17403714	17403722	8
Deletion	Chr6	19410993	19410994	1
Deletion	Chr4	19686162	19686165	3
Deletion	Chr2	20399921	20399929	8	OsKitaake02g198800
Deletion	Chr1	22640235	22640238	3
Deletion	Chr7	23723246	23723264	18
Deletion	Chr6	24301382	24301389	7
Deletion	Chr1	24767887	24767896	9
Deletion	Chr1	25536974	25536975	1
Deletion	Chr7	25934535	25934536	1
Deletion	Chr1	30238332	30238333	1
Deletion	Chr1	30825857	30825859	2
Deletion	Chr4	33265345	33265351	6	OsKitaake04g271800
Deletion	Chr4	33330680	33330681	1
Deletion	Chr1	33786028	33786033	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	253562	841017	OsKitaake06g001800
Inversion	Chr12	10693329	10714313
Inversion	Chr7	14334870	14654341
Inversion	Chr7	14334873	14654341

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes