Search Kitaake

Mutant Information

Mutant Name	FN628-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN628-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4300304 A-G Homo INTRON
SBS Chr1 7012531 G-A Hetero INTERGENIC
SBS Chr1 7694176 C-T Hetero INTERGENIC
SBS Chr1 28241317 C-T Hetero INTERGENIC
SBS Chr1 41262397 G-C Homo INTRON
SBS Chr4 8459479 A-T Hetero INTERGENIC
SBS Chr4 10312697 C-A Homo INTERGENIC
SBS Chr4 10313002 T-G Homo INTERGENIC
SBS Chr4 11641765 G-A Homo INTERGENIC
SBS Chr5 16679155 G-A Hetero INTERGENIC
SBS Chr5 17802108 C-G Hetero UTR_3_PRIME
SBS Chr6 6131253 C-A Hetero INTERGENIC
SBS Chr6 7574859 G-A Hetero INTERGENIC
SBS Chr6 10983945 C-T Hetero INTERGENIC
SBS Chr6 17597454 A-C Hetero INTERGENIC
SBS Chr6 18355630 T-A Hetero INTRON
SBS Chr6 20232442 G-A Homo INTERGENIC
SBS Chr7 5602866 C-T Homo INTERGENIC
SBS Chr7 6233756 C-G Homo INTERGENIC
SBS Chr7 14151314 T-C Homo INTERGENIC
SBS Chr7 20826231 C-A Homo INTERGENIC
SBS Chr8 3693753 T-G Hetero INTERGENIC
SBS Chr8 4808142 G-T Hetero INTERGENIC
SBS Chr9 5820237 C-T Hetero INTERGENIC
SBS Chr9 10834505 T-A Hetero INTRON
SBS Chr9 22706507 C-T Homo INTERGENIC
SBS Chr10 17300842 G-A Hetero INTERGENIC
SBS Chr10 22799148 G-A Hetero INTERGENIC
SBS Chr12 5585476 A-T Homo INTERGENIC
SBS Chr12 9021286 C-T Homo INTRON
SBS Chr12 16231363 T-C Homo INTERGENIC
SBS Chr12 18579149 T-C Homo INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 20796 20797 1
Deletion Chr7 1617834 1617840 6
Deletion Chr9 2937548 2937555 7
Deletion Chr4 6158898 6158900 2
Deletion Chr2 6400095 6400101 6
Deletion Chr10 9431002 9431004 2
Deletion Chr2 10155284 10155285 1 OsKitaake02g121901
Deletion Chr12 11688132 11688297 165
Deletion Chr1 12144786 12144788 2
Deletion Chr5 13922001 14132000 209999 13
Deletion Chr12 14418033 14418034 1
Deletion Chr12 14962621 14962623 2
Deletion Chr8 19954741 19954743 2
Deletion Chr1 38257927 38257928 1

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 17628168 17628171 2
Insertion Chr1 30371996 30371999 2
Insertion Chr12 16602304 16602306 1
Insertion Chr12 26098872 26098874 1
Insertion Chr6 20641324 20641326 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4300304	A-G	Homo	INTRON
SBS	Chr1	7012531	G-A	Hetero	INTERGENIC
SBS	Chr1	7694176	C-T	Hetero	INTERGENIC
SBS	Chr1	28241317	C-T	Hetero	INTERGENIC
SBS	Chr1	41262397	G-C	Homo	INTRON
SBS	Chr4	8459479	A-T	Hetero	INTERGENIC
SBS	Chr4	10312697	C-A	Homo	INTERGENIC
SBS	Chr4	10313002	T-G	Homo	INTERGENIC
SBS	Chr4	11641765	G-A	Homo	INTERGENIC
SBS	Chr5	16679155	G-A	Hetero	INTERGENIC
SBS	Chr5	17802108	C-G	Hetero	UTR_3_PRIME
SBS	Chr6	6131253	C-A	Hetero	INTERGENIC
SBS	Chr6	7574859	G-A	Hetero	INTERGENIC
SBS	Chr6	10983945	C-T	Hetero	INTERGENIC
SBS	Chr6	17597454	A-C	Hetero	INTERGENIC
SBS	Chr6	18355630	T-A	Hetero	INTRON
SBS	Chr6	20232442	G-A	Homo	INTERGENIC
SBS	Chr7	5602866	C-T	Homo	INTERGENIC
SBS	Chr7	6233756	C-G	Homo	INTERGENIC
SBS	Chr7	14151314	T-C	Homo	INTERGENIC
SBS	Chr7	20826231	C-A	Homo	INTERGENIC
SBS	Chr8	3693753	T-G	Hetero	INTERGENIC
SBS	Chr8	4808142	G-T	Hetero	INTERGENIC
SBS	Chr9	5820237	C-T	Hetero	INTERGENIC
SBS	Chr9	10834505	T-A	Hetero	INTRON
SBS	Chr9	22706507	C-T	Homo	INTERGENIC
SBS	Chr10	17300842	G-A	Hetero	INTERGENIC
SBS	Chr10	22799148	G-A	Hetero	INTERGENIC
SBS	Chr12	5585476	A-T	Homo	INTERGENIC
SBS	Chr12	9021286	C-T	Homo	INTRON
SBS	Chr12	16231363	T-C	Homo	INTERGENIC
SBS	Chr12	18579149	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	20796	20797	1
Deletion	Chr7	1617834	1617840	6
Deletion	Chr9	2937548	2937555	7
Deletion	Chr4	6158898	6158900	2
Deletion	Chr2	6400095	6400101	6
Deletion	Chr10	9431002	9431004	2
Deletion	Chr2	10155284	10155285	1	OsKitaake02g121901
Deletion	Chr12	11688132	11688297	165
Deletion	Chr1	12144786	12144788	2
Deletion	Chr5	13922001	14132000	209999	13
Deletion	Chr12	14418033	14418034	1
Deletion	Chr12	14962621	14962623	2
Deletion	Chr8	19954741	19954743	2
Deletion	Chr1	38257927	38257928	1

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes