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Mutant Information

Mutant Name	FN629-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN629-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 40440938 A-T Homo INTERGENIC
SBS Chr2 7830092 A-G Hetero INTERGENIC
SBS Chr3 12698511 T-A Hetero INTERGENIC
SBS Chr3 19528017 T-A Hetero INTERGENIC
SBS Chr4 6935673 C-T Hetero INTERGENIC
SBS Chr4 15860394 C-T Homo INTERGENIC
SBS Chr4 16244425 C-T Hetero INTERGENIC
SBS Chr4 34620505 C-T Hetero INTERGENIC
SBS Chr5 2534303 T-A Hetero INTERGENIC
SBS Chr8 6183357 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake08g066200
SBS Chr8 9054855 C-T Homo NON_SYNONYMOUS_CODING OsKitaake08g082600
SBS Chr9 6128488 G-A Homo INTRON
SBS Chr9 16332119 G-A Homo UTR_3_PRIME
SBS Chr9 16357647 T-C Homo INTRON
SBS Chr9 17694206 C-T Hetero INTERGENIC
SBS Chr10 6617936 G-A Hetero INTERGENIC
SBS Chr11 8785386 G-A Homo INTERGENIC
SBS Chr11 18402306 T-C Homo INTERGENIC
SBS Chr12 11906861 G-A Hetero INTERGENIC
SBS Chr12 21526061 T-A Hetero INTERGENIC
SBS Chr12 21526062 A-T Hetero INTERGENIC
SBS Chr12 21526067 A-T Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 2353721 2353728 7
Deletion Chr2 2622120 2622132 12
Deletion Chr9 2755373 2755374 1
Deletion Chr2 4037767 4037771 4
Deletion Chr9 6512450 6512453 3
Deletion Chr7 11855851 11855854 3
Deletion Chr6 13596671 13596672 1
Deletion Chr1 13684856 13684864 8
Deletion Chr3 22433324 22433325 1
Deletion Chr7 26774219 26774220 1
Deletion Chr3 26798836 26798840 4

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 2716503 2716506 2
Insertion Chr4 3803602 3803609 6
Insertion Chr5 2652766 2652768 1
Insertion Chr7 4187126 4187129 2
Insertion Chr8 10876909 10876918 8

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 9962487 Chr1 14059014 OsKitaake01g161800
Translocation Chr11 19777358 Chr1 42277685 2
Translocation Chr11 19778019 Chr1 42277683 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	40440938	A-T	Homo	INTERGENIC
SBS	Chr2	7830092	A-G	Hetero	INTERGENIC
SBS	Chr3	12698511	T-A	Hetero	INTERGENIC
SBS	Chr3	19528017	T-A	Hetero	INTERGENIC
SBS	Chr4	6935673	C-T	Hetero	INTERGENIC
SBS	Chr4	15860394	C-T	Homo	INTERGENIC
SBS	Chr4	16244425	C-T	Hetero	INTERGENIC
SBS	Chr4	34620505	C-T	Hetero	INTERGENIC
SBS	Chr5	2534303	T-A	Hetero	INTERGENIC
SBS	Chr8	6183357	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g066200
SBS	Chr8	9054855	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g082600
SBS	Chr9	6128488	G-A	Homo	INTRON
SBS	Chr9	16332119	G-A	Homo	UTR_3_PRIME
SBS	Chr9	16357647	T-C	Homo	INTRON
SBS	Chr9	17694206	C-T	Hetero	INTERGENIC
SBS	Chr10	6617936	G-A	Hetero	INTERGENIC
SBS	Chr11	8785386	G-A	Homo	INTERGENIC
SBS	Chr11	18402306	T-C	Homo	INTERGENIC
SBS	Chr12	11906861	G-A	Hetero	INTERGENIC
SBS	Chr12	21526061	T-A	Hetero	INTERGENIC
SBS	Chr12	21526062	A-T	Hetero	INTERGENIC
SBS	Chr12	21526067	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	2353721	2353728	7
Deletion	Chr2	2622120	2622132	12
Deletion	Chr9	2755373	2755374	1
Deletion	Chr2	4037767	4037771	4
Deletion	Chr9	6512450	6512453	3
Deletion	Chr7	11855851	11855854	3
Deletion	Chr6	13596671	13596672	1
Deletion	Chr1	13684856	13684864	8
Deletion	Chr3	22433324	22433325	1
Deletion	Chr7	26774219	26774220	1
Deletion	Chr3	26798836	26798840	4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	9962487	Chr1	14059014	OsKitaake01g161800
Translocation	Chr11	19777358	Chr1	42277685	2
Translocation	Chr11	19778019	Chr1	42277683	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes