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Mutant Information

Mutant Name	FN630-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN630-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2187339 G-T Hetero INTERGENIC
SBS Chr2 2322381 C-T Homo INTERGENIC
SBS Chr2 2322382 A-T Homo INTERGENIC
SBS Chr2 31023661 C-T Hetero INTERGENIC
SBS Chr2 33839019 G-C Hetero SYNONYMOUS_CODING
SBS Chr3 1493220 A-G Hetero INTERGENIC
SBS Chr4 6934083 G-T Homo INTERGENIC
SBS Chr4 6934084 A-T Homo INTERGENIC
SBS Chr4 7163939 A-G Homo INTERGENIC
SBS Chr4 26378373 T-A Hetero INTRON
SBS Chr4 36812254 C-T Hetero INTERGENIC
SBS Chr5 12374913 T-C Hetero INTERGENIC
SBS Chr5 18881921 C-T Hetero INTERGENIC
SBS Chr6 23867507 T-C Hetero INTRON
SBS Chr6 25865399 A-G Hetero UTR_3_PRIME
SBS Chr6 29202719 G-T Hetero INTERGENIC
SBS Chr7 9877677 C-T Hetero INTERGENIC
SBS Chr7 17517899 G-A Hetero INTERGENIC
SBS Chr8 3380451 C-T Hetero INTERGENIC
SBS Chr9 5629272 G-C Homo INTERGENIC
SBS Chr10 8409194 C-T Hetero INTERGENIC
SBS Chr11 8795012 T-G Homo INTERGENIC
SBS Chr11 18835873 C-T Homo INTERGENIC
SBS Chr11 27405005 C-T Hetero INTERGENIC
SBS Chr12 775503 T-A Homo INTRON
SBS Chr12 11121585 C-T Hetero INTERGENIC
SBS Chr12 16236368 T-A Hetero INTERGENIC
SBS Chr12 16761119 C-T Hetero INTERGENIC
SBS Chr12 16761120 C-T Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 3284440 3284442 2
Deletion Chr3 4545251 4545264 13
Deletion Chr11 6766144 6766152 8
Deletion Chr12 13910464 13910465 1
Deletion Chr12 14610001 14653000 42999 3
Deletion Chr8 18881046 18881052 6
Deletion Chr2 22074356 22074360 4
Deletion Chr8 22087622 22087638 16
Deletion Chr11 25405399 25405400 1
Deletion Chr12 27138583 27138584 1
Deletion Chr6 29060045 29060046 1
Deletion Chr6 29075001 29129000 53999 10
Deletion Chr8 29298701 29299407 706

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 3416809 3416812 2
Insertion Chr7 19375234 19375237 2
Insertion Chr12 10016519 10016522 2
Insertion Chr2 25139969 25139971 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 10140891 10671702
Inversion Chr10 10140893 10671993

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2187339	G-T	Hetero	INTERGENIC
SBS	Chr2	2322381	C-T	Homo	INTERGENIC
SBS	Chr2	2322382	A-T	Homo	INTERGENIC
SBS	Chr2	31023661	C-T	Hetero	INTERGENIC
SBS	Chr2	33839019	G-C	Hetero	SYNONYMOUS_CODING
SBS	Chr3	1493220	A-G	Hetero	INTERGENIC
SBS	Chr4	6934083	G-T	Homo	INTERGENIC
SBS	Chr4	6934084	A-T	Homo	INTERGENIC
SBS	Chr4	7163939	A-G	Homo	INTERGENIC
SBS	Chr4	26378373	T-A	Hetero	INTRON
SBS	Chr4	36812254	C-T	Hetero	INTERGENIC
SBS	Chr5	12374913	T-C	Hetero	INTERGENIC
SBS	Chr5	18881921	C-T	Hetero	INTERGENIC
SBS	Chr6	23867507	T-C	Hetero	INTRON
SBS	Chr6	25865399	A-G	Hetero	UTR_3_PRIME
SBS	Chr6	29202719	G-T	Hetero	INTERGENIC
SBS	Chr7	9877677	C-T	Hetero	INTERGENIC
SBS	Chr7	17517899	G-A	Hetero	INTERGENIC
SBS	Chr8	3380451	C-T	Hetero	INTERGENIC
SBS	Chr9	5629272	G-C	Homo	INTERGENIC
SBS	Chr10	8409194	C-T	Hetero	INTERGENIC
SBS	Chr11	8795012	T-G	Homo	INTERGENIC
SBS	Chr11	18835873	C-T	Homo	INTERGENIC
SBS	Chr11	27405005	C-T	Hetero	INTERGENIC
SBS	Chr12	775503	T-A	Homo	INTRON
SBS	Chr12	11121585	C-T	Hetero	INTERGENIC
SBS	Chr12	16236368	T-A	Hetero	INTERGENIC
SBS	Chr12	16761119	C-T	Hetero	INTERGENIC
SBS	Chr12	16761120	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	3284440	3284442	2
Deletion	Chr3	4545251	4545264	13
Deletion	Chr11	6766144	6766152	8
Deletion	Chr12	13910464	13910465	1
Deletion	Chr12	14610001	14653000	42999	3
Deletion	Chr8	18881046	18881052	6
Deletion	Chr2	22074356	22074360	4
Deletion	Chr8	22087622	22087638	16
Deletion	Chr11	25405399	25405400	1
Deletion	Chr12	27138583	27138584	1
Deletion	Chr6	29060045	29060046	1
Deletion	Chr6	29075001	29129000	53999	10
Deletion	Chr8	29298701	29299407	706

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	10140891	10671702
Inversion	Chr10	10140893	10671993

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes