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Mutant Information

Mutant Name	FN631-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN631-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1434964 C-A Homo INTERGENIC
SBS Chr1 1767136 A-G Homo INTERGENIC
SBS Chr1 4511120 A-T Hetero INTERGENIC
SBS Chr1 10852276 T-A Hetero INTERGENIC
SBS Chr1 22477146 C-T Hetero UTR_5_PRIME
SBS Chr2 4742888 T-C Homo INTRON
SBS Chr2 29721770 C-A Homo INTERGENIC
SBS Chr2 32241527 C-T Homo INTRON
SBS Chr2 33469097 C-T Homo INTRON
SBS Chr3 4006468 G-T Hetero INTERGENIC
SBS Chr3 10818765 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g148900
SBS Chr3 18927359 A-G Hetero INTERGENIC
SBS Chr3 20158246 C-G Hetero INTERGENIC
SBS Chr3 27247056 A-C Hetero INTERGENIC
SBS Chr4 9108803 T-C Hetero INTERGENIC
SBS Chr4 15076165 T-C Hetero INTERGENIC
SBS Chr4 18275565 T-A Hetero INTERGENIC
SBS Chr4 18279558 C-T Hetero INTERGENIC
SBS Chr5 6184666 G-A Hetero INTERGENIC
SBS Chr5 12208052 C-A Hetero INTERGENIC
SBS Chr6 2663243 C-T Homo INTERGENIC
SBS Chr6 24238108 T-A Hetero INTERGENIC
SBS Chr6 24238109 G-A Hetero INTERGENIC
SBS Chr6 29534379 C-A Homo SYNONYMOUS_CODING
SBS Chr7 4856773 G-T Hetero UTR_3_PRIME
SBS Chr7 5408709 C-T Homo INTRON
SBS Chr7 27318180 C-A Hetero INTERGENIC
SBS Chr8 6105252 C-G Hetero INTERGENIC
SBS Chr8 18038035 G-A Hetero INTERGENIC
SBS Chr9 6503666 G-C Hetero INTERGENIC
SBS Chr9 14749925 T-G Homo INTERGENIC
SBS Chr9 18372388 G-A Homo INTERGENIC
SBS Chr10 154235 G-A Hetero INTERGENIC
SBS Chr10 8181375 C-T Hetero INTERGENIC
SBS Chr11 13307769 T-C Hetero INTERGENIC
SBS Chr11 19254773 G-A Hetero INTERGENIC
SBS Chr11 19393066 C-T Hetero INTERGENIC
SBS Chr11 26103671 C-G Hetero INTERGENIC
SBS Chr11 26635344 A-T Hetero INTERGENIC
SBS Chr11 27265689 A-T Hetero INTERGENIC
SBS Chr12 1981510 C-T Homo INTERGENIC
SBS Chr12 14008642 C-A Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1300128 1300132 4 OsKitaake12g019000
Deletion Chr7 4078438 4078440 2
Deletion Chr12 4938042 4938055 13
Deletion Chr7 7718295 7718296 1
Deletion Chr10 8706655 8706656 1
Deletion Chr2 11583634 11583636 2
Deletion Chr1 14685780 14685784 4 OsKitaake01g166200
Deletion Chr1 15607270 15607271 1
Deletion Chr8 23189761 23189765 4
Deletion Chr12 23857380 23857401 21
Deletion Chr6 24174001 24231000 56999 5
Deletion Chr12 26371486 26371495 9

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 24761923 24761926 2
Insertion Chr5 20291898 20291901 2
Insertion Chr7 2795134 2795137 2
Insertion Chr7 8621797 8621801 3
Insertion Chr3 19362193 19362195 1
Insertion Chr9 2754476 2754478 1

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 1065800 Chr2 21403671

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1434964	C-A	Homo	INTERGENIC
SBS	Chr1	1767136	A-G	Homo	INTERGENIC
SBS	Chr1	4511120	A-T	Hetero	INTERGENIC
SBS	Chr1	10852276	T-A	Hetero	INTERGENIC
SBS	Chr1	22477146	C-T	Hetero	UTR_5_PRIME
SBS	Chr2	4742888	T-C	Homo	INTRON
SBS	Chr2	29721770	C-A	Homo	INTERGENIC
SBS	Chr2	32241527	C-T	Homo	INTRON
SBS	Chr2	33469097	C-T	Homo	INTRON
SBS	Chr3	4006468	G-T	Hetero	INTERGENIC
SBS	Chr3	10818765	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g148900
SBS	Chr3	18927359	A-G	Hetero	INTERGENIC
SBS	Chr3	20158246	C-G	Hetero	INTERGENIC
SBS	Chr3	27247056	A-C	Hetero	INTERGENIC
SBS	Chr4	9108803	T-C	Hetero	INTERGENIC
SBS	Chr4	15076165	T-C	Hetero	INTERGENIC
SBS	Chr4	18275565	T-A	Hetero	INTERGENIC
SBS	Chr4	18279558	C-T	Hetero	INTERGENIC
SBS	Chr5	6184666	G-A	Hetero	INTERGENIC
SBS	Chr5	12208052	C-A	Hetero	INTERGENIC
SBS	Chr6	2663243	C-T	Homo	INTERGENIC
SBS	Chr6	24238108	T-A	Hetero	INTERGENIC
SBS	Chr6	24238109	G-A	Hetero	INTERGENIC
SBS	Chr6	29534379	C-A	Homo	SYNONYMOUS_CODING
SBS	Chr7	4856773	G-T	Hetero	UTR_3_PRIME
SBS	Chr7	5408709	C-T	Homo	INTRON
SBS	Chr7	27318180	C-A	Hetero	INTERGENIC
SBS	Chr8	6105252	C-G	Hetero	INTERGENIC
SBS	Chr8	18038035	G-A	Hetero	INTERGENIC
SBS	Chr9	6503666	G-C	Hetero	INTERGENIC
SBS	Chr9	14749925	T-G	Homo	INTERGENIC
SBS	Chr9	18372388	G-A	Homo	INTERGENIC
SBS	Chr10	154235	G-A	Hetero	INTERGENIC
SBS	Chr10	8181375	C-T	Hetero	INTERGENIC
SBS	Chr11	13307769	T-C	Hetero	INTERGENIC
SBS	Chr11	19254773	G-A	Hetero	INTERGENIC
SBS	Chr11	19393066	C-T	Hetero	INTERGENIC
SBS	Chr11	26103671	C-G	Hetero	INTERGENIC
SBS	Chr11	26635344	A-T	Hetero	INTERGENIC
SBS	Chr11	27265689	A-T	Hetero	INTERGENIC
SBS	Chr12	1981510	C-T	Homo	INTERGENIC
SBS	Chr12	14008642	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1300128	1300132	4	OsKitaake12g019000
Deletion	Chr7	4078438	4078440	2
Deletion	Chr12	4938042	4938055	13
Deletion	Chr7	7718295	7718296	1
Deletion	Chr10	8706655	8706656	1
Deletion	Chr2	11583634	11583636	2
Deletion	Chr1	14685780	14685784	4	OsKitaake01g166200
Deletion	Chr1	15607270	15607271	1
Deletion	Chr8	23189761	23189765	4
Deletion	Chr12	23857380	23857401	21
Deletion	Chr6	24174001	24231000	56999	5
Deletion	Chr12	26371486	26371495	9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	1065800	Chr2	21403671

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes