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Mutant Information

Mutant Name	FN632-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN632-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2770539 A-G Homo INTERGENIC
SBS Chr1 19834049 T-C Hetero SYNONYMOUS_CODING
SBS Chr1 21396581 C-T Homo INTERGENIC
SBS Chr1 22610901 G-A Homo INTERGENIC
SBS Chr2 7778792 C-A Homo INTERGENIC
SBS Chr2 26944663 A-G Homo INTERGENIC
SBS Chr2 33329592 C-T Hetero INTERGENIC
SBS Chr2 37138685 G-A Hetero INTERGENIC
SBS Chr3 16415326 A-G Hetero INTERGENIC
SBS Chr3 35553343 T-A Hetero INTERGENIC
SBS Chr4 13668571 T-A Hetero INTERGENIC
SBS Chr4 14662548 T-A Homo NON_SYNONYMOUS_CODING OsKitaake04g069800
SBS Chr4 25143697 C-T Hetero INTRON
SBS Chr4 28723208 A-C Hetero INTERGENIC
SBS Chr5 7681212 C-T Hetero INTERGENIC
SBS Chr5 15239969 T-C Hetero INTERGENIC
SBS Chr6 22997596 C-T Homo INTERGENIC
SBS Chr6 24399341 G-T Hetero INTERGENIC
SBS Chr7 2978696 G-T Hetero INTERGENIC
SBS Chr7 20926970 C-T Homo INTERGENIC
SBS Chr8 19130716 T-C Homo INTERGENIC
SBS Chr8 29085336 A-T Hetero INTERGENIC
SBS Chr8 29085337 T-A Hetero INTERGENIC
SBS Chr8 29085338 C-T Hetero INTERGENIC
SBS Chr9 3161069 T-C Homo INTERGENIC
SBS Chr9 5071774 T-G Homo INTERGENIC
SBS Chr9 8932025 G-A Hetero INTERGENIC
SBS Chr9 10282339 C-T Hetero INTRON
SBS Chr9 11734395 T-C Hetero INTRON
SBS Chr9 12076600 T-A Hetero INTERGENIC
SBS Chr10 11609786 G-A Homo INTERGENIC
SBS Chr10 15835808 C-T Hetero INTRON
SBS Chr10 16929583 T-A Hetero UTR_5_PRIME
SBS Chr11 13280285 C-A Homo INTERGENIC
SBS Chr11 15229410 G-T Hetero INTERGENIC
SBS Chr11 18439765 C-A Hetero INTERGENIC
SBS Chr11 24722624 G-A Hetero INTERGENIC
SBS Chr12 21880771 C-A Homo INTERGENIC
SBS Chr12 23791475 C-T Homo INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 3456228 3456355 127
Deletion Chr2 5885647 5885648 1
Deletion Chr6 6013281 6013282 1
Deletion Chr11 6049001 6061000 11999 OsKitaake11g073500
Deletion Chr4 11077905 11077907 2
Deletion Chr10 11641632 11641640 8
Deletion Chr2 14369965 14369966 1 OsKitaake02g154800
Deletion Chr1 15734834 15734845 11 OsKitaake01g171500
Deletion Chr12 16859001 16870000 10999
Deletion Chr12 22400931 22400932 1
Deletion Chr1 23525191 23525192 1

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 10234294 10234297 2
Insertion Chr6 13329233 13329237 3
Insertion Chr1 9692959 9692961 1
Insertion Chr3 6885482 6885485 2 OsKitaake03g097400
Insertion Chr8 11785930 11785932 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 10635654 11313205
Inversion Chr1 18676625 18910676

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 10399326 Chr8 22918228
Translocation Chr12 10399329 Chr8 22915575 OsKitaake08g175500
Translocation Chr12 16871514 Chr2 33573535 OsKitaake02g347200
Translocation Chr10 17087260 Chr4 27446779
Translocation Chr10 17087591 Chr4 27446877
Translocation Chr2 33573066 Chr1 10635813 OsKitaake02g347100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2770539	A-G	Homo	INTERGENIC
SBS	Chr1	19834049	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr1	21396581	C-T	Homo	INTERGENIC
SBS	Chr1	22610901	G-A	Homo	INTERGENIC
SBS	Chr2	7778792	C-A	Homo	INTERGENIC
SBS	Chr2	26944663	A-G	Homo	INTERGENIC
SBS	Chr2	33329592	C-T	Hetero	INTERGENIC
SBS	Chr2	37138685	G-A	Hetero	INTERGENIC
SBS	Chr3	16415326	A-G	Hetero	INTERGENIC
SBS	Chr3	35553343	T-A	Hetero	INTERGENIC
SBS	Chr4	13668571	T-A	Hetero	INTERGENIC
SBS	Chr4	14662548	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g069800
SBS	Chr4	25143697	C-T	Hetero	INTRON
SBS	Chr4	28723208	A-C	Hetero	INTERGENIC
SBS	Chr5	7681212	C-T	Hetero	INTERGENIC
SBS	Chr5	15239969	T-C	Hetero	INTERGENIC
SBS	Chr6	22997596	C-T	Homo	INTERGENIC
SBS	Chr6	24399341	G-T	Hetero	INTERGENIC
SBS	Chr7	2978696	G-T	Hetero	INTERGENIC
SBS	Chr7	20926970	C-T	Homo	INTERGENIC
SBS	Chr8	19130716	T-C	Homo	INTERGENIC
SBS	Chr8	29085336	A-T	Hetero	INTERGENIC
SBS	Chr8	29085337	T-A	Hetero	INTERGENIC
SBS	Chr8	29085338	C-T	Hetero	INTERGENIC
SBS	Chr9	3161069	T-C	Homo	INTERGENIC
SBS	Chr9	5071774	T-G	Homo	INTERGENIC
SBS	Chr9	8932025	G-A	Hetero	INTERGENIC
SBS	Chr9	10282339	C-T	Hetero	INTRON
SBS	Chr9	11734395	T-C	Hetero	INTRON
SBS	Chr9	12076600	T-A	Hetero	INTERGENIC
SBS	Chr10	11609786	G-A	Homo	INTERGENIC
SBS	Chr10	15835808	C-T	Hetero	INTRON
SBS	Chr10	16929583	T-A	Hetero	UTR_5_PRIME
SBS	Chr11	13280285	C-A	Homo	INTERGENIC
SBS	Chr11	15229410	G-T	Hetero	INTERGENIC
SBS	Chr11	18439765	C-A	Hetero	INTERGENIC
SBS	Chr11	24722624	G-A	Hetero	INTERGENIC
SBS	Chr12	21880771	C-A	Homo	INTERGENIC
SBS	Chr12	23791475	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	3456228	3456355	127
Deletion	Chr2	5885647	5885648	1
Deletion	Chr6	6013281	6013282	1
Deletion	Chr11	6049001	6061000	11999	OsKitaake11g073500
Deletion	Chr4	11077905	11077907	2
Deletion	Chr10	11641632	11641640	8
Deletion	Chr2	14369965	14369966	1	OsKitaake02g154800
Deletion	Chr1	15734834	15734845	11	OsKitaake01g171500
Deletion	Chr12	16859001	16870000	10999
Deletion	Chr12	22400931	22400932	1
Deletion	Chr1	23525191	23525192	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	10635654	11313205
Inversion	Chr1	18676625	18910676

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes