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Mutant Information

Mutant Name	FN654-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN654-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1705248 C-T Hetero INTERGENIC
SBS Chr1 23429701 A-T Hetero INTRON
SBS Chr2 18321172 G-A Homo INTERGENIC
SBS Chr2 21820746 G-T Homo INTERGENIC
SBS Chr2 36324189 T-G Hetero INTERGENIC
SBS Chr3 10346813 G-A Homo NON_SYNONYMOUS_CODING OsKitaake03g141300
SBS Chr3 14258957 T-C Homo INTERGENIC
SBS Chr4 18493470 G-A Homo INTERGENIC
SBS Chr4 24920684 A-T Hetero INTERGENIC
SBS Chr5 5907664 C-T Homo INTERGENIC
SBS Chr5 14847826 G-A Hetero INTERGENIC
SBS Chr6 17833043 T-C Homo INTERGENIC
SBS Chr6 19601520 T-A Homo INTERGENIC
SBS Chr7 1233737 T-A Hetero UTR_3_PRIME
SBS Chr7 4811704 T-G Hetero INTRON
SBS Chr7 16332961 G-A Homo INTERGENIC
SBS Chr8 29203460 C-G Hetero INTERGENIC
SBS Chr9 14222963 G-A Homo INTERGENIC
SBS Chr10 4976383 G-T Hetero INTERGENIC
SBS Chr10 17030228 G-C Hetero UTR_3_PRIME
SBS Chr11 2547658 C-T Homo INTERGENIC
SBS Chr11 11446781 G-T Homo INTERGENIC
SBS Chr11 17844214 C-T Homo INTERGENIC
SBS Chr12 7619087 G-A Hetero INTERGENIC
SBS Chr12 8224275 T-A Hetero INTERGENIC
SBS Chr12 12119227 T-C Hetero INTERGENIC
SBS Chr12 14891252 T-A Hetero INTERGENIC
SBS Chr12 22879466 C-A Hetero UTR_3_PRIME
SBS Chr12 24763210 G-A Hetero INTERGENIC
SBS Chr12 26042290 G-C Hetero INTRON

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 1943728 1943733 5
Deletion Chr9 2775293 2775301 8
Deletion Chr12 7621271 7621277 6
Deletion Chr1 8456384 8456387 3
Deletion Chr11 8816918 8816924 6
Deletion Chr3 9153493 9153496 3
Deletion Chr2 9530246 9530249 3
Deletion Chr4 9882054 9882055 1
Deletion Chr9 12551681 12551684 3
Deletion Chr1 15847468 15847469 1
Deletion Chr10 17174901 17174903 2
Deletion Chr10 19852720 19852721 1
Deletion Chr6 20555700 20555709 9
Deletion Chr3 25160500 25160501 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 12393747 12393749 1
Insertion Chr1 13129988 13129991 2
Insertion Chr12 19582289 19582293 3
Insertion Chr1 38196203 38196210 6 OsKitaake01g407400
Insertion Chr3 22492942 22492944 1
Insertion Chr5 12594783 12594785 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 18184526 18188473 OsKitaake06g166403
Inversion Chr6 19599930 19601375

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 419206 Chr1 29859890

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1705248	C-T	Hetero	INTERGENIC
SBS	Chr1	23429701	A-T	Hetero	INTRON
SBS	Chr2	18321172	G-A	Homo	INTERGENIC
SBS	Chr2	21820746	G-T	Homo	INTERGENIC
SBS	Chr2	36324189	T-G	Hetero	INTERGENIC
SBS	Chr3	10346813	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g141300
SBS	Chr3	14258957	T-C	Homo	INTERGENIC
SBS	Chr4	18493470	G-A	Homo	INTERGENIC
SBS	Chr4	24920684	A-T	Hetero	INTERGENIC
SBS	Chr5	5907664	C-T	Homo	INTERGENIC
SBS	Chr5	14847826	G-A	Hetero	INTERGENIC
SBS	Chr6	17833043	T-C	Homo	INTERGENIC
SBS	Chr6	19601520	T-A	Homo	INTERGENIC
SBS	Chr7	1233737	T-A	Hetero	UTR_3_PRIME
SBS	Chr7	4811704	T-G	Hetero	INTRON
SBS	Chr7	16332961	G-A	Homo	INTERGENIC
SBS	Chr8	29203460	C-G	Hetero	INTERGENIC
SBS	Chr9	14222963	G-A	Homo	INTERGENIC
SBS	Chr10	4976383	G-T	Hetero	INTERGENIC
SBS	Chr10	17030228	G-C	Hetero	UTR_3_PRIME
SBS	Chr11	2547658	C-T	Homo	INTERGENIC
SBS	Chr11	11446781	G-T	Homo	INTERGENIC
SBS	Chr11	17844214	C-T	Homo	INTERGENIC
SBS	Chr12	7619087	G-A	Hetero	INTERGENIC
SBS	Chr12	8224275	T-A	Hetero	INTERGENIC
SBS	Chr12	12119227	T-C	Hetero	INTERGENIC
SBS	Chr12	14891252	T-A	Hetero	INTERGENIC
SBS	Chr12	22879466	C-A	Hetero	UTR_3_PRIME
SBS	Chr12	24763210	G-A	Hetero	INTERGENIC
SBS	Chr12	26042290	G-C	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1943728	1943733	5
Deletion	Chr9	2775293	2775301	8
Deletion	Chr12	7621271	7621277	6
Deletion	Chr1	8456384	8456387	3
Deletion	Chr11	8816918	8816924	6
Deletion	Chr3	9153493	9153496	3
Deletion	Chr2	9530246	9530249	3
Deletion	Chr4	9882054	9882055	1
Deletion	Chr9	12551681	12551684	3
Deletion	Chr1	15847468	15847469	1
Deletion	Chr10	17174901	17174903	2
Deletion	Chr10	19852720	19852721	1
Deletion	Chr6	20555700	20555709	9
Deletion	Chr3	25160500	25160501	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	18184526	18188473	OsKitaake06g166403
Inversion	Chr6	19599930	19601375

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes