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| Mutant Information |
|---|
| Mutant Name | FN660-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN660-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 21
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 3303605 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g043200 |
| SBS | Chr1 | 12695932 | G-A | Hetero | INTRON | |
| SBS | Chr1 | 19481398 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 10653170 | T-G | Homo | INTERGENIC | |
| SBS | Chr2 | 24604982 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 1516515 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 14254041 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 14254042 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 9614884 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 12430670 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 17934671 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 1334283 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 19179528 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 2915591 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 11674798 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 11583138 | A-C | Homo | INTERGENIC | |
| SBS | Chr9 | 11858470 | T-C | Homo | INTRON | |
| SBS | Chr10 | 5586753 | G-C | Homo | INTERGENIC | |
| SBS | Chr11 | 11659883 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 7113361 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 8629265 | C-T | Homo | INTERGENIC |
Deletions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 6210756 | 6210760 | 4 | OsKitaake07g073600 |
| Deletion | Chr10 | 8096190 | 8096273 | 83 | |
| Deletion | Chr4 | 12365001 | 12381000 | 15999 | |
| Deletion | Chr3 | 16715948 | 16715955 | 7 | |
| Deletion | Chr5 | 19804675 | 19804677 | 2 | |
| Deletion | Chr8 | 19902457 | 19902471 | 14 | |
| Deletion | Chr4 | 34748045 | 34748192 | 147 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 22930771 | 22930774 | 2 | |
| Insertion | Chr1 | 29077620 | 29077624 | 3 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 3364239 | 3785135 | OsKitaake01g050900 |
| Inversion | Chr10 | 22385157 | 22489282 | OsKitaake10g183800 |
| Inversion | Chr10 | 22385160 | 22489290 | OsKitaake10g183800 |
| Inversion | Chr5 | 26608574 | 27423952 |
Translocations: 7
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 2879251 | Chr5 | 26608589 | OsKitaake11g040800 |
| Translocation | Chr11 | 2879258 | Chr5 | 26613188 | 2 |
| Translocation | Chr9 | 13284221 | Chr1 | 3784344 | 2 |
| Translocation | Chr8 | 18579640 | Chr2 | 28815172 | OsKitaake02g290101 |
| Translocation | Chr8 | 18581537 | Chr2 | 28815173 | OsKitaake02g290101 |
| Translocation | Chr4 | 30158680 | Chr3 | 14273688 | 2 |
| Translocation | Chr4 | 30158691 | Chr3 | 14266071 | 2 |