Search Kitaake

Mutant Information

Mutant Name	FN661-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN661-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3298641 G-T Homo INTERGENIC
SBS Chr1 30454310 C-G Hetero INTRON
SBS Chr1 34062677 T-A Hetero SYNONYMOUS_CODING
SBS Chr1 40922415 A-C Hetero SYNONYMOUS_CODING
SBS Chr1 40931349 A-G Hetero UTR_5_PRIME
SBS Chr2 6570222 C-A Homo INTERGENIC
SBS Chr2 11483817 C-T Hetero INTERGENIC
SBS Chr2 21148366 T-C Hetero INTRON
SBS Chr2 25510434 C-A Homo INTRON
SBS Chr2 31591103 C-A Hetero INTERGENIC
SBS Chr3 1872933 A-T Hetero INTERGENIC
SBS Chr3 2122790 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g030500
SBS Chr3 10829038 G-T Homo INTERGENIC
SBS Chr3 30522397 C-A Hetero INTERGENIC
SBS Chr3 31145641 T-A Hetero INTERGENIC
SBS Chr4 14705523 A-G Homo INTERGENIC
SBS Chr4 23183258 C-T Hetero INTERGENIC
SBS Chr4 27089267 C-T Homo INTERGENIC
SBS Chr5 17139097 C-T Hetero INTERGENIC
SBS Chr6 23688091 A-G Homo SYNONYMOUS_CODING
SBS Chr7 21365422 T-A Homo INTERGENIC
SBS Chr7 23879361 A-G Hetero INTERGENIC
SBS Chr7 26229232 T-A Hetero INTRON
SBS Chr7 27842183 T-C Hetero INTERGENIC
SBS Chr7 27842184 G-C Hetero INTERGENIC
SBS Chr7 27964390 T-C Hetero INTRON
SBS Chr8 2912195 T-A Homo INTERGENIC
SBS Chr8 17618797 C-A Hetero INTERGENIC
SBS Chr9 18666758 T-C Hetero INTERGENIC
SBS Chr10 254865 T-C Hetero INTERGENIC
SBS Chr10 4741470 G-C Homo INTERGENIC
SBS Chr11 22466309 A-T Hetero INTERGENIC
SBS Chr12 9508631 A-C Hetero INTERGENIC
SBS Chr12 10109665 C-T Hetero INTERGENIC
SBS Chr12 14338611 G-T Hetero INTERGENIC
SBS Chr12 15617651 T-G Hetero INTERGENIC
SBS Chr12 17336064 G-T Hetero INTERGENIC
SBS Chr12 19686171 A-C Hetero INTERGENIC
SBS Chr12 25360069 G-A Hetero INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 605831 605836 5 OsKitaake01g114200
Deletion Chr1 3331036 3331046 10
Deletion Chr10 4451616 4451625 9
Deletion Chr2 5091591 5091592 1
Deletion Chr3 6280035 6280155 120
Deletion Chr9 8296286 8296295 9
Deletion Chr8 9185073 9185074 1
Deletion Chr1 10150382 10150384 2
Deletion Chr1 11382465 11382478 13
Deletion Chr9 12293829 12293831 2
Deletion Chr4 13948713 13948718 5
Deletion Chr4 14563756 14563759 3
Deletion Chr5 17334001 17401000 66999 9
Deletion Chr3 17538124 17538125 1
Deletion Chr1 18108494 18108500 6
Deletion Chr4 19502103 19502105 2
Deletion Chr6 20359671 20359678 7
Deletion Chr11 25297955 25297956 1 OsKitaake11g203100
Deletion Chr11 29481548 29481549 1 OsKitaake11g242500
Deletion Chr2 33417282 33417296 14
Deletion Chr1 36052805 36052808 3

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 10699739 10699742 2
Insertion Chr5 821856 821859 2
Insertion Chr6 5878477 5878480 2
Insertion Chr9 7681786 7681789 2
Insertion Chr4 10454656 10454658 1

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 5759701 5857571
Inversion Chr2 5759706 5857571
Inversion Chr9 10514232 10873188
Inversion Chr9 10514243 10873199
Inversion Chr5 17338579 17470044 OsKitaake05g133000
Inversion Chr5 17400584 17444221

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 7836524 Chr4 21264982
Translocation Chr9 7836532 Chr4 21264013
Translocation Chr9 10890255 Chr3 16209927 OsKitaake09g067700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3298641	G-T	Homo	INTERGENIC
SBS	Chr1	30454310	C-G	Hetero	INTRON
SBS	Chr1	34062677	T-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	40922415	A-C	Hetero	SYNONYMOUS_CODING
SBS	Chr1	40931349	A-G	Hetero	UTR_5_PRIME
SBS	Chr2	6570222	C-A	Homo	INTERGENIC
SBS	Chr2	11483817	C-T	Hetero	INTERGENIC
SBS	Chr2	21148366	T-C	Hetero	INTRON
SBS	Chr2	25510434	C-A	Homo	INTRON
SBS	Chr2	31591103	C-A	Hetero	INTERGENIC
SBS	Chr3	1872933	A-T	Hetero	INTERGENIC
SBS	Chr3	2122790	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g030500
SBS	Chr3	10829038	G-T	Homo	INTERGENIC
SBS	Chr3	30522397	C-A	Hetero	INTERGENIC
SBS	Chr3	31145641	T-A	Hetero	INTERGENIC
SBS	Chr4	14705523	A-G	Homo	INTERGENIC
SBS	Chr4	23183258	C-T	Hetero	INTERGENIC
SBS	Chr4	27089267	C-T	Homo	INTERGENIC
SBS	Chr5	17139097	C-T	Hetero	INTERGENIC
SBS	Chr6	23688091	A-G	Homo	SYNONYMOUS_CODING
SBS	Chr7	21365422	T-A	Homo	INTERGENIC
SBS	Chr7	23879361	A-G	Hetero	INTERGENIC
SBS	Chr7	26229232	T-A	Hetero	INTRON
SBS	Chr7	27842183	T-C	Hetero	INTERGENIC
SBS	Chr7	27842184	G-C	Hetero	INTERGENIC
SBS	Chr7	27964390	T-C	Hetero	INTRON
SBS	Chr8	2912195	T-A	Homo	INTERGENIC
SBS	Chr8	17618797	C-A	Hetero	INTERGENIC
SBS	Chr9	18666758	T-C	Hetero	INTERGENIC
SBS	Chr10	254865	T-C	Hetero	INTERGENIC
SBS	Chr10	4741470	G-C	Homo	INTERGENIC
SBS	Chr11	22466309	A-T	Hetero	INTERGENIC
SBS	Chr12	9508631	A-C	Hetero	INTERGENIC
SBS	Chr12	10109665	C-T	Hetero	INTERGENIC
SBS	Chr12	14338611	G-T	Hetero	INTERGENIC
SBS	Chr12	15617651	T-G	Hetero	INTERGENIC
SBS	Chr12	17336064	G-T	Hetero	INTERGENIC
SBS	Chr12	19686171	A-C	Hetero	INTERGENIC
SBS	Chr12	25360069	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	605831	605836	5	OsKitaake01g114200
Deletion	Chr1	3331036	3331046	10
Deletion	Chr10	4451616	4451625	9
Deletion	Chr2	5091591	5091592	1
Deletion	Chr3	6280035	6280155	120
Deletion	Chr9	8296286	8296295	9
Deletion	Chr8	9185073	9185074	1
Deletion	Chr1	10150382	10150384	2
Deletion	Chr1	11382465	11382478	13
Deletion	Chr9	12293829	12293831	2
Deletion	Chr4	13948713	13948718	5
Deletion	Chr4	14563756	14563759	3
Deletion	Chr5	17334001	17401000	66999	9
Deletion	Chr3	17538124	17538125	1
Deletion	Chr1	18108494	18108500	6
Deletion	Chr4	19502103	19502105	2
Deletion	Chr6	20359671	20359678	7
Deletion	Chr11	25297955	25297956	1	OsKitaake11g203100
Deletion	Chr11	29481548	29481549	1	OsKitaake11g242500
Deletion	Chr2	33417282	33417296	14
Deletion	Chr1	36052805	36052808	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	5759701	5857571
Inversion	Chr2	5759706	5857571
Inversion	Chr9	10514232	10873188
Inversion	Chr9	10514243	10873199
Inversion	Chr5	17338579	17470044	OsKitaake05g133000
Inversion	Chr5	17400584	17444221

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes