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| Mutant Information |
|---|
| Mutant Name | FN662-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN662-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 17
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 4354524 | T-C | Hetero | INTRON | |
| SBS | Chr1 | 18838063 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 10863614 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 11887866 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 9366272 | G-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 11451386 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 29737457 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 9328510 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 20882285 | A-G | Homo | INTERGENIC | |
| SBS | Chr6 | 6226217 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 24772447 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 9520918 | C-G | Homo | INTERGENIC | |
| SBS | Chr7 | 12271862 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 20800436 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 5374980 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 12939857 | A-T | Homo | INTERGENIC | |
| SBS | Chr11 | 13075313 | G-C | Homo | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 2020640 | 2020644 | 4 | |
| Deletion | Chr2 | 4406398 | 4406404 | 6 | |
| Deletion | Chr12 | 5548421 | 5548422 | 1 | |
| Deletion | Chr11 | 5959117 | 5959118 | 1 | OsKitaake11g072600 |
| Deletion | Chr8 | 6949879 | 6949880 | 1 | |
| Deletion | Chr12 | 8758714 | 8758718 | 4 | |
| Deletion | Chr2 | 16071001 | 16189000 | 117999 | 5 |
| Deletion | Chr3 | 19603545 | 19603546 | 1 | |
| Deletion | Chr2 | 21585365 | 21585376 | 11 | |
| Deletion | Chr8 | 21693139 | 21693142 | 3 | |
| Deletion | Chr3 | 24561001 | 24610000 | 48999 | 3 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 22273493 | 22273496 | 2 | |
| Insertion | Chr7 | 18398048 | 18398051 | 2 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 16073220 | 16457463 | OsKitaake02g166300 |
| Inversion | Chr2 | 16234228 | 16457468 | OsKitaake02g166900 |
| Inversion | Chr8 | 17368120 | 17430303 | |
| Inversion | Chr3 | 24563485 | 25166922 | OsKitaake03g262800 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr3 | 30187684 | Chr2 | 16187897 |