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| Mutant Information |
|---|
| Mutant Name | FN664-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN664-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 23
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 34720514 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 16187397 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 21225835 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 12155685 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 31492634 | A-C | Homo | INTERGENIC | |
| SBS | Chr4 | 1337369 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 14989766 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 22514727 | A-T | Hetero | INTRON | |
| SBS | Chr4 | 26349676 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 997702 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g011900 |
| SBS | Chr5 | 16454160 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 16816651 | T-A | Hetero | INTRON | |
| SBS | Chr6 | 216917 | A-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake06g001200 |
| SBS | Chr6 | 17955978 | C-T | Homo | INTRON | |
| SBS | Chr6 | 24810407 | T-A | Homo | INTERGENIC | |
| SBS | Chr6 | 24810410 | T-A | Homo | INTERGENIC | |
| SBS | Chr8 | 2691857 | G-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 10167342 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 14024744 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 14695852 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 17838618 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 7429956 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 25787769 | G-T | Homo | UTR_3_PRIME |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 559610 | 559613 | 3 | |
| Deletion | Chr6 | 950824 | 950836 | 12 | |
| Deletion | Chr4 | 1550822 | 1550825 | 3 | |
| Deletion | Chr6 | 3647842 | 3647845 | 3 | |
| Deletion | Chr8 | 7886073 | 7886074 | 1 | OsKitaake08g072300 |
| Deletion | Chr8 | 8125092 | 8125218 | 126 | OsKitaake08g074300 |
| Deletion | Chr11 | 8902809 | 8902818 | 9 | |
| Deletion | Chr11 | 13452962 | 13452967 | 5 | |
| Deletion | Chr10 | 16350469 | 16350470 | 1 | |
| Deletion | Chr10 | 16384001 | 16487000 | 102999 | 13 |
| Deletion | Chr10 | 16492001 | 16554000 | 61999 | 6 |
| Deletion | Chr9 | 21779223 | 21779229 | 6 | |
| Deletion | Chr12 | 25436514 | 25436515 | 1 | |
| Deletion | Chr6 | 27878225 | 27878237 | 12 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 7571717 | 7571720 | 2 | |
| Insertion | Chr12 | 4249578 | 4249581 | 2 | |
| Insertion | Chr11 | 12509206 | 12509209 | 2 |