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Mutant Information

Mutant Name	FN666-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN666-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2697507 C-A Hetero INTRON
SBS Chr1 11940447 C-G Hetero UTR_3_PRIME
SBS Chr1 20171516 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g198501
SBS Chr1 28257678 C-G Homo INTERGENIC
SBS Chr1 35350238 T-G Hetero INTRON
SBS Chr2 499155 C-A Homo INTERGENIC
SBS Chr2 8552039 G-T Hetero INTERGENIC
SBS Chr2 8552040 C-T Hetero INTERGENIC
SBS Chr2 9239150 G-A Hetero INTRON
SBS Chr2 23275480 C-T Homo INTERGENIC
SBS Chr2 26258049 T-C Homo SYNONYMOUS_CODING
SBS Chr3 14174702 T-C Hetero UTR_3_PRIME
SBS Chr4 22991601 A-C Hetero INTRON
SBS Chr4 24893509 G-T Hetero INTERGENIC
SBS Chr5 16394610 T-C Hetero INTERGENIC
SBS Chr5 18705867 C-T Hetero INTERGENIC
SBS Chr5 21258939 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake05g171700
SBS Chr5 27945578 G-T Hetero INTERGENIC
SBS Chr6 2466160 C-T Hetero INTERGENIC
SBS Chr6 5672711 C-A Hetero INTERGENIC
SBS Chr6 9300009 C-T Hetero INTERGENIC
SBS Chr6 14912305 G-A Homo INTERGENIC
SBS Chr6 15368201 A-C Hetero INTERGENIC
SBS Chr6 17287692 T-A Homo INTRON
SBS Chr7 3958864 C-T Hetero INTERGENIC
SBS Chr7 5317600 A-T Homo INTERGENIC
SBS Chr7 5465132 A-G Homo INTRON
SBS Chr7 6420979 A-G Homo INTERGENIC
SBS Chr7 12237425 G-A Homo INTERGENIC
SBS Chr7 21770063 G-C Homo INTRON
SBS Chr7 27038514 C-T Homo NON_SYNONYMOUS_CODING OsKitaake07g252700
SBS Chr8 11788402 A-C Hetero INTERGENIC
SBS Chr8 13685836 A-G Hetero INTERGENIC
SBS Chr8 13685840 A-G Hetero INTERGENIC
SBS Chr8 25629963 G-A Homo INTERGENIC
SBS Chr11 2419199 T-A Homo INTERGENIC
SBS Chr11 2419201 A-T Homo INTERGENIC
SBS Chr11 7921567 T-A Homo INTERGENIC
SBS Chr11 15378761 G-A Homo INTERGENIC
SBS Chr11 15626099 C-T Hetero INTERGENIC
SBS Chr11 19968400 T-A Hetero INTERGENIC
SBS Chr11 24007570 T-C Hetero SYNONYMOUS_CODING
SBS Chr12 7902292 G-A Homo INTERGENIC
SBS Chr12 9328073 C-A Homo INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 4095455 4095457 2
Deletion Chr10 4231454 4231580 126
Deletion Chr2 9221001 9237000 15999 2
Deletion Chr9 10219679 10219686 7
Deletion Chr1 11569861 11570023 162
Deletion Chr2 11677001 11769000 91999 3
Deletion Chr2 11771001 11841000 69999 5
Deletion Chr2 12526801 12526803 2
Deletion Chr12 19380985 19380986 1 OsKitaake12g145100
Deletion Chr2 21781997 21781998 1
Deletion Chr8 24036909 24036917 8 OsKitaake08g185400
Deletion Chr7 24121099 24121100 1
Deletion Chr11 29454668 29454670 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 16712484 16712487 2
Insertion Chr12 9173827 9173830 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 33932411 34228924 OsKitaake02g351700
Inversion Chr2 33932429 34000732 OsKitaake02g351700

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 20720243 Chr1 31371345 OsKitaake12g161700
Translocation Chr12 20723879 Chr1 31371359

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2697507	C-A	Hetero	INTRON
SBS	Chr1	11940447	C-G	Hetero	UTR_3_PRIME
SBS	Chr1	20171516	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g198501
SBS	Chr1	28257678	C-G	Homo	INTERGENIC
SBS	Chr1	35350238	T-G	Hetero	INTRON
SBS	Chr2	499155	C-A	Homo	INTERGENIC
SBS	Chr2	8552039	G-T	Hetero	INTERGENIC
SBS	Chr2	8552040	C-T	Hetero	INTERGENIC
SBS	Chr2	9239150	G-A	Hetero	INTRON
SBS	Chr2	23275480	C-T	Homo	INTERGENIC
SBS	Chr2	26258049	T-C	Homo	SYNONYMOUS_CODING
SBS	Chr3	14174702	T-C	Hetero	UTR_3_PRIME
SBS	Chr4	22991601	A-C	Hetero	INTRON
SBS	Chr4	24893509	G-T	Hetero	INTERGENIC
SBS	Chr5	16394610	T-C	Hetero	INTERGENIC
SBS	Chr5	18705867	C-T	Hetero	INTERGENIC
SBS	Chr5	21258939	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g171700
SBS	Chr5	27945578	G-T	Hetero	INTERGENIC
SBS	Chr6	2466160	C-T	Hetero	INTERGENIC
SBS	Chr6	5672711	C-A	Hetero	INTERGENIC
SBS	Chr6	9300009	C-T	Hetero	INTERGENIC
SBS	Chr6	14912305	G-A	Homo	INTERGENIC
SBS	Chr6	15368201	A-C	Hetero	INTERGENIC
SBS	Chr6	17287692	T-A	Homo	INTRON
SBS	Chr7	3958864	C-T	Hetero	INTERGENIC
SBS	Chr7	5317600	A-T	Homo	INTERGENIC
SBS	Chr7	5465132	A-G	Homo	INTRON
SBS	Chr7	6420979	A-G	Homo	INTERGENIC
SBS	Chr7	12237425	G-A	Homo	INTERGENIC
SBS	Chr7	21770063	G-C	Homo	INTRON
SBS	Chr7	27038514	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g252700
SBS	Chr8	11788402	A-C	Hetero	INTERGENIC
SBS	Chr8	13685836	A-G	Hetero	INTERGENIC
SBS	Chr8	13685840	A-G	Hetero	INTERGENIC
SBS	Chr8	25629963	G-A	Homo	INTERGENIC
SBS	Chr11	2419199	T-A	Homo	INTERGENIC
SBS	Chr11	2419201	A-T	Homo	INTERGENIC
SBS	Chr11	7921567	T-A	Homo	INTERGENIC
SBS	Chr11	15378761	G-A	Homo	INTERGENIC
SBS	Chr11	15626099	C-T	Hetero	INTERGENIC
SBS	Chr11	19968400	T-A	Hetero	INTERGENIC
SBS	Chr11	24007570	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr12	7902292	G-A	Homo	INTERGENIC
SBS	Chr12	9328073	C-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	4095455	4095457	2
Deletion	Chr10	4231454	4231580	126
Deletion	Chr2	9221001	9237000	15999	2
Deletion	Chr9	10219679	10219686	7
Deletion	Chr1	11569861	11570023	162
Deletion	Chr2	11677001	11769000	91999	3
Deletion	Chr2	11771001	11841000	69999	5
Deletion	Chr2	12526801	12526803	2
Deletion	Chr12	19380985	19380986	1	OsKitaake12g145100
Deletion	Chr2	21781997	21781998	1
Deletion	Chr8	24036909	24036917	8	OsKitaake08g185400
Deletion	Chr7	24121099	24121100	1
Deletion	Chr11	29454668	29454670	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	33932411	34228924	OsKitaake02g351700
Inversion	Chr2	33932429	34000732	OsKitaake02g351700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes