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| Mutant Information |
|---|
| Mutant Name | FN669-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN669-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 38
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1647253 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 3191932 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 11213159 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 25209173 | T-C | Hetero | INTRON | |
| SBS | Chr1 | 42823513 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 6322725 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 7317867 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 12283548 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 28488171 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 32375741 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 34218214 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 497376 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 15415198 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 3945237 | T-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 35637331 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 10592151 | T-A | Hetero | INTRON | |
| SBS | Chr6 | 12739984 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 30235835 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 1699251 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 10176659 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 13544788 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g118900 |
| SBS | Chr7 | 20669797 | G-A | Hetero | INTRON | |
| SBS | Chr7 | 27224576 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 2611033 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 3072245 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 13995283 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 14798969 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 25529818 | T-A | Hetero | INTRON | |
| SBS | Chr9 | 3920378 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 18349522 | C-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 2154814 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 9635164 | C-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 13136432 | C-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 21244242 | C-A | Hetero | STOP_GAINED | OsKitaake11g168200 |
| SBS | Chr11 | 24970159 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 15830981 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 15830982 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 25646078 | C-T | Hetero | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 952590 | 952592 | 2 | |
| Deletion | Chr8 | 9393884 | 9393887 | 3 | |
| Deletion | Chr2 | 9962899 | 9962903 | 4 | |
| Deletion | Chr10 | 18305161 | 18305163 | 2 | |
| Deletion | Chr6 | 24988001 | 25054000 | 65999 | 4 |
| Deletion | Chr8 | 25520654 | 25520656 | 2 | OsKitaake08g201200 |
| Deletion | Chr1 | 29337855 | 29337856 | 1 | |
| Deletion | Chr1 | 30807803 | 30807804 | 1 | |
| Deletion | Chr2 | 34025864 | 34025867 | 3 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr7 | 550138 | 550141 | 2 | |
| Insertion | Chr8 | 133307 | 133309 | 1 | |
| Insertion | Chr9 | 10007753 | 10007756 | 2 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 14823589 | 14877121 | OsKitaake08g116500 |
| Inversion | Chr7 | 18279248 | 18689638 | |
| Inversion | Chr7 | 18279258 | 18689644 |
Translocations: 5
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 2601603 | Chr7 | 24333449 | OsKitaake07g216400 |
| Translocation | Chr11 | 2601640 | Chr7 | 24333705 | OsKitaake07g216400 |
| Translocation | Chr10 | 9671669 | Chr1 | 2384092 | |
| Translocation | Chr10 | 9671675 | Chr1 | 2379731 | |
| Translocation | Chr8 | 14823588 | Chr7 | 14534516 |