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Mutant Information

Mutant Name	FN670-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN670-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 36716533 A-T Homo INTERGENIC
SBS Chr1 41874937 G-A Hetero INTERGENIC
SBS Chr1 44181369 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g493400
SBS Chr2 1516362 G-A Hetero INTERGENIC
SBS Chr2 5594895 A-T Homo UTR_3_PRIME
SBS Chr2 5594896 G-T Homo UTR_3_PRIME
SBS Chr2 6422140 T-A Homo INTERGENIC
SBS Chr2 8030400 G-C Homo NON_SYNONYMOUS_CODING OsKitaake02g103000
SBS Chr2 10153051 C-T Hetero INTERGENIC
SBS Chr2 13769177 A-C Hetero INTERGENIC
SBS Chr2 20616225 G-C Homo INTRON
SBS Chr3 33339945 G-A Hetero INTERGENIC
SBS Chr4 2340456 C-T Hetero INTERGENIC
SBS Chr4 15609855 T-C Homo INTERGENIC
SBS Chr4 27225220 C-T Hetero INTERGENIC
SBS Chr5 1152225 C-T Homo INTERGENIC
SBS Chr6 12302681 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g131600
SBS Chr6 20073015 T-C Hetero INTERGENIC
SBS Chr7 6376552 C-T Hetero INTRON
SBS Chr7 11545320 G-T Hetero INTRON
SBS Chr7 19279999 A-T Hetero INTERGENIC
SBS Chr7 24156053 A-G Hetero INTERGENIC
SBS Chr8 11609338 G-C Hetero INTERGENIC
SBS Chr8 21315101 G-A Hetero INTERGENIC
SBS Chr8 22262408 A-G Hetero INTERGENIC
SBS Chr8 22577510 G-T Hetero INTRON
SBS Chr8 23063818 T-A Hetero INTERGENIC
SBS Chr9 12155697 C-T Homo INTRON
SBS Chr9 16575792 A-T Hetero INTERGENIC
SBS Chr10 5331623 G-C Homo INTERGENIC
SBS Chr10 9115264 G-T Homo INTERGENIC
SBS Chr10 14163498 G-C Homo INTERGENIC
SBS Chr11 8444436 T-A Hetero INTRON
SBS Chr12 13123996 G-A Homo INTERGENIC
SBS Chr12 14679531 G-C Homo INTRON
SBS Chr12 14685990 C-T Homo INTERGENIC
SBS Chr12 16193216 C-T Homo INTERGENIC
SBS Chr12 20610860 C-A Homo INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 4552797 4552799 2
Deletion Chr8 6307665 6307683 18
Deletion Chr12 7661716 7661720 4
Deletion Chr10 14609001 14687000 77999 4
Deletion Chr10 14644999 14645047 48
Deletion Chr5 18810009 18810010 1
Deletion Chr11 20138634 20138731 97
Deletion Chr4 21234755 21234756 1
Deletion Chr2 22458517 22458521 4
Deletion Chr1 22929823 22929833 10
Deletion Chr3 27812371 27812376 5
Deletion Chr2 30178625 30178631 6
Deletion Chr2 30552637 30552708 71
Deletion Chr1 40941634 40941636 2

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 23339646 23339649 2
Insertion Chr3 30282411 30282413 1
Insertion Chr6 7628625 7628628 2
Insertion Chr8 26682322 26682325 2
Insertion Chr12 4301562 4301565 2
Insertion Chr2 35360528 35360531 2
Insertion Chr12 10853863 10853868 4

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 3709703 3950833
Inversion Chr11 3709718 3950858
Inversion Chr3 23005445 23296207 OsKitaake03g250700
Inversion Chr3 23005454 23296208 OsKitaake03g250700
Inversion Chr6 26759559 27122971 OsKitaake06g243800
Inversion Chr6 26759563 27122985 OsKitaake06g243800

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 1026238 Chr2 7726386
Translocation Chr10 1036173 Chr2 7726391
Translocation Chr5 9555400 Chr1 42366475
Translocation Chr5 9556280 Chr1 42366471 OsKitaake05g087900
Translocation Chr11 15516520 Chr8 12246748

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	36716533	A-T	Homo	INTERGENIC
SBS	Chr1	41874937	G-A	Hetero	INTERGENIC
SBS	Chr1	44181369	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g493400
SBS	Chr2	1516362	G-A	Hetero	INTERGENIC
SBS	Chr2	5594895	A-T	Homo	UTR_3_PRIME
SBS	Chr2	5594896	G-T	Homo	UTR_3_PRIME
SBS	Chr2	6422140	T-A	Homo	INTERGENIC
SBS	Chr2	8030400	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g103000
SBS	Chr2	10153051	C-T	Hetero	INTERGENIC
SBS	Chr2	13769177	A-C	Hetero	INTERGENIC
SBS	Chr2	20616225	G-C	Homo	INTRON
SBS	Chr3	33339945	G-A	Hetero	INTERGENIC
SBS	Chr4	2340456	C-T	Hetero	INTERGENIC
SBS	Chr4	15609855	T-C	Homo	INTERGENIC
SBS	Chr4	27225220	C-T	Hetero	INTERGENIC
SBS	Chr5	1152225	C-T	Homo	INTERGENIC
SBS	Chr6	12302681	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g131600
SBS	Chr6	20073015	T-C	Hetero	INTERGENIC
SBS	Chr7	6376552	C-T	Hetero	INTRON
SBS	Chr7	11545320	G-T	Hetero	INTRON
SBS	Chr7	19279999	A-T	Hetero	INTERGENIC
SBS	Chr7	24156053	A-G	Hetero	INTERGENIC
SBS	Chr8	11609338	G-C	Hetero	INTERGENIC
SBS	Chr8	21315101	G-A	Hetero	INTERGENIC
SBS	Chr8	22262408	A-G	Hetero	INTERGENIC
SBS	Chr8	22577510	G-T	Hetero	INTRON
SBS	Chr8	23063818	T-A	Hetero	INTERGENIC
SBS	Chr9	12155697	C-T	Homo	INTRON
SBS	Chr9	16575792	A-T	Hetero	INTERGENIC
SBS	Chr10	5331623	G-C	Homo	INTERGENIC
SBS	Chr10	9115264	G-T	Homo	INTERGENIC
SBS	Chr10	14163498	G-C	Homo	INTERGENIC
SBS	Chr11	8444436	T-A	Hetero	INTRON
SBS	Chr12	13123996	G-A	Homo	INTERGENIC
SBS	Chr12	14679531	G-C	Homo	INTRON
SBS	Chr12	14685990	C-T	Homo	INTERGENIC
SBS	Chr12	16193216	C-T	Homo	INTERGENIC
SBS	Chr12	20610860	C-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	4552797	4552799	2
Deletion	Chr8	6307665	6307683	18
Deletion	Chr12	7661716	7661720	4
Deletion	Chr10	14609001	14687000	77999	4
Deletion	Chr10	14644999	14645047	48
Deletion	Chr5	18810009	18810010	1
Deletion	Chr11	20138634	20138731	97
Deletion	Chr4	21234755	21234756	1
Deletion	Chr2	22458517	22458521	4
Deletion	Chr1	22929823	22929833	10
Deletion	Chr3	27812371	27812376	5
Deletion	Chr2	30178625	30178631	6
Deletion	Chr2	30552637	30552708	71
Deletion	Chr1	40941634	40941636	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	3709703	3950833
Inversion	Chr11	3709718	3950858
Inversion	Chr3	23005445	23296207	OsKitaake03g250700
Inversion	Chr3	23005454	23296208	OsKitaake03g250700
Inversion	Chr6	26759559	27122971	OsKitaake06g243800
Inversion	Chr6	26759563	27122985	OsKitaake06g243800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes