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Mutant Information

Mutant Name	FN678-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN678-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13941380 T-A Hetero INTERGENIC
SBS Chr1 31920045 T-A Hetero INTRON
SBS Chr2 1728832 A-T Homo INTERGENIC
SBS Chr2 1728839 T-A Homo INTERGENIC
SBS Chr2 2107785 A-G Hetero SPLICE_SITE_REGION
SBS Chr2 2107787 G-T Hetero SPLICE_SITE_DONOR OsKitaake02g031800
SBS Chr4 19099283 A-T Homo INTRON
SBS Chr5 8369489 A-G Hetero INTERGENIC
SBS Chr5 10305634 T-A Hetero INTERGENIC
SBS Chr5 27166233 C-T Homo SYNONYMOUS_CODING
SBS Chr6 11560583 A-C Homo INTERGENIC
SBS Chr6 18763093 G-A Hetero INTERGENIC
SBS Chr6 29460604 G-A Hetero INTERGENIC
SBS Chr7 8456240 G-A Homo INTERGENIC
SBS Chr8 2627250 G-T Hetero INTERGENIC
SBS Chr8 2627252 A-G Hetero INTERGENIC
SBS Chr8 8341118 T-A Hetero INTERGENIC
SBS Chr8 18121254 G-A Hetero INTERGENIC
SBS Chr8 25338666 C-T Homo INTERGENIC
SBS Chr9 6465227 C-A Hetero INTERGENIC
SBS Chr9 13036186 T-A Homo INTERGENIC
SBS Chr9 20744328 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g176400
SBS Chr10 6861600 G-A Homo INTERGENIC
SBS Chr11 2929108 T-A Hetero INTERGENIC
SBS Chr11 11999659 G-C Hetero INTERGENIC
SBS Chr11 12017746 G-A Hetero INTRON
SBS Chr11 13118725 C-T Hetero INTERGENIC
SBS Chr11 20338214 T-A Hetero INTRON
SBS Chr12 3651184 G-T Hetero INTERGENIC
SBS Chr12 8142928 C-A Homo INTERGENIC
SBS Chr12 8744293 A-T Homo INTERGENIC
SBS Chr12 10095374 G-T Hetero INTERGENIC
SBS Chr12 17341529 A-T Hetero INTERGENIC
SBS Chr12 19219854 A-G Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 539278 539279 1
Deletion Chr8 764001 870000 105999 5
Deletion Chr8 3334399 3334410 11 OsKitaake08g037300
Deletion Chr10 4423433 4423435 2
Deletion Chr12 6753806 6753810 4
Deletion Chr5 8371234 8371236 2
Deletion Chr7 9816079 9816081 2
Deletion Chr9 10504104 10504115 11
Deletion Chr11 10512631 10512637 6 OsKitaake11g104500
Deletion Chr5 11655727 11655738 11
Deletion Chr9 11887595 11887613 18
Deletion Chr9 21130355 21130362 7
Deletion Chr7 22903673 22903674 1
Deletion Chr2 35332312 35332322 10

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 2806457 2806460 2
Insertion Chr8 6974686 6974689 2
Insertion Chr11 24769842 24769845 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 14140574 14578564 OsKitaake12g116800
Inversion Chr12 14140597 14581365 OsKitaake12g116800
Inversion Chr12 19837549 19896614
Inversion Chr4 29628498 29702941 OsKitaake04g227550

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 61941 Chr3 4895483 OsKitaake03g070400
Translocation Chr12 61950 Chr3 4895830 OsKitaake03g070400
Translocation Chr6 29822466 Chr5 27773023 OsKitaake05g254400
Translocation Chr6 29826456 Chr5 27773019 OsKitaake05g254400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13941380	T-A	Hetero	INTERGENIC
SBS	Chr1	31920045	T-A	Hetero	INTRON
SBS	Chr2	1728832	A-T	Homo	INTERGENIC
SBS	Chr2	1728839	T-A	Homo	INTERGENIC
SBS	Chr2	2107785	A-G	Hetero	SPLICE_SITE_REGION
SBS	Chr2	2107787	G-T	Hetero	SPLICE_SITE_DONOR	OsKitaake02g031800
SBS	Chr4	19099283	A-T	Homo	INTRON
SBS	Chr5	8369489	A-G	Hetero	INTERGENIC
SBS	Chr5	10305634	T-A	Hetero	INTERGENIC
SBS	Chr5	27166233	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr6	11560583	A-C	Homo	INTERGENIC
SBS	Chr6	18763093	G-A	Hetero	INTERGENIC
SBS	Chr6	29460604	G-A	Hetero	INTERGENIC
SBS	Chr7	8456240	G-A	Homo	INTERGENIC
SBS	Chr8	2627250	G-T	Hetero	INTERGENIC
SBS	Chr8	2627252	A-G	Hetero	INTERGENIC
SBS	Chr8	8341118	T-A	Hetero	INTERGENIC
SBS	Chr8	18121254	G-A	Hetero	INTERGENIC
SBS	Chr8	25338666	C-T	Homo	INTERGENIC
SBS	Chr9	6465227	C-A	Hetero	INTERGENIC
SBS	Chr9	13036186	T-A	Homo	INTERGENIC
SBS	Chr9	20744328	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g176400
SBS	Chr10	6861600	G-A	Homo	INTERGENIC
SBS	Chr11	2929108	T-A	Hetero	INTERGENIC
SBS	Chr11	11999659	G-C	Hetero	INTERGENIC
SBS	Chr11	12017746	G-A	Hetero	INTRON
SBS	Chr11	13118725	C-T	Hetero	INTERGENIC
SBS	Chr11	20338214	T-A	Hetero	INTRON
SBS	Chr12	3651184	G-T	Hetero	INTERGENIC
SBS	Chr12	8142928	C-A	Homo	INTERGENIC
SBS	Chr12	8744293	A-T	Homo	INTERGENIC
SBS	Chr12	10095374	G-T	Hetero	INTERGENIC
SBS	Chr12	17341529	A-T	Hetero	INTERGENIC
SBS	Chr12	19219854	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	539278	539279	1
Deletion	Chr8	764001	870000	105999	5
Deletion	Chr8	3334399	3334410	11	OsKitaake08g037300
Deletion	Chr10	4423433	4423435	2
Deletion	Chr12	6753806	6753810	4
Deletion	Chr5	8371234	8371236	2
Deletion	Chr7	9816079	9816081	2
Deletion	Chr9	10504104	10504115	11
Deletion	Chr11	10512631	10512637	6	OsKitaake11g104500
Deletion	Chr5	11655727	11655738	11
Deletion	Chr9	11887595	11887613	18
Deletion	Chr9	21130355	21130362	7
Deletion	Chr7	22903673	22903674	1
Deletion	Chr2	35332312	35332322	10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	14140574	14578564	OsKitaake12g116800
Inversion	Chr12	14140597	14581365	OsKitaake12g116800
Inversion	Chr12	19837549	19896614
Inversion	Chr4	29628498	29702941	OsKitaake04g227550

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes