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| Mutant Information |
|---|
| Mutant Name | FN685-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN685-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 42379483 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 18791599 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 29815528 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 32685855 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 3391120 | G-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 5893972 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 9112785 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 20291853 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 22971343 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 1950929 | G-A | Hetero | INTRON | |
| SBS | Chr6 | 1950930 | C-A | Hetero | INTRON | |
| SBS | Chr7 | 20827585 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 24576495 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 1770949 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 3740062 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 3961905 | G-A | Hetero | INTRON | |
| SBS | Chr8 | 5939909 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 19214348 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 2807529 | A-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr9 | 21091948 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 22080477 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake09g198000 |
| SBS | Chr9 | 22080482 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr10 | 9885837 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 16581146 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake10g113000 |
| SBS | Chr10 | 18812354 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 18812355 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 15733519 | T-A | Hetero | UTR_3_PRIME | |
| SBS | Chr12 | 7315286 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 21385254 | C-T | Hetero | INTERGENIC |
Deletions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 2132977 | 2133252 | 275 | |
| Deletion | Chr5 | 6397001 | 6419000 | 21999 | 3 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 16288853 | 16293882 | 2 |
| Inversion | Chr1 | 16288854 | 16293888 | 2 |
| Inversion | Chr7 | 26003157 | 26281729 | OsKitaake07g238300 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr5 | 706106 | Chr2 | 37089493 | |
| Translocation | Chr9 | 19681179 | Chr7 | 26298312 | OsKitaake09g161400 |
| Translocation | Chr9 | 19681182 | Chr7 | 26281737 | OsKitaake09g161400 |