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| Mutant Information |
|---|
| Mutant Name | FN700-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN700-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 26363997 | G-A | Homo | INTRON | |
| SBS | Chr2 | 10374025 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 13992085 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 4604305 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 18765284 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 20948460 | A-T | Hetero | INTRON | |
| SBS | Chr3 | 26149376 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 35695586 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 19861506 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 23832420 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 24451469 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 25881941 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 9408646 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 30825700 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 12362060 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 9826536 | G-A | Hetero | UTR_5_PRIME | |
| SBS | Chr8 | 13428447 | G-A | Hetero | INTRON | |
| SBS | Chr8 | 13727073 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 22150754 | G-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr8 | 28344664 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 8571216 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 5275124 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake10g037700 |
| SBS | Chr11 | 10274065 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 2298573 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 25686042 | A-G | Homo | UTR_5_PRIME | |
| SBS | Chr12 | 26390667 | A-G | Homo | INTERGENIC |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 3865525 | 3865527 | 2 | |
| Deletion | Chr7 | 7307958 | 7307971 | 13 | OsKitaake07g082300 |
| Deletion | Chr10 | 8309811 | 8309815 | 4 | |
| Deletion | Chr8 | 8947758 | 8947760 | 2 | |
| Deletion | Chr6 | 9511713 | 9511717 | 4 | |
| Deletion | Chr11 | 11516273 | 11516274 | 1 | |
| Deletion | Chr1 | 11569861 | 11570023 | 162 | |
| Deletion | Chr10 | 12834913 | 12834915 | 2 | |
| Deletion | Chr7 | 13543001 | 13567000 | 23999 | OsKitaake07g118900 |
| Deletion | Chr10 | 13672001 | 13723000 | 50999 | 7 |
| Deletion | Chr2 | 22074356 | 22074360 | 4 | |
| Deletion | Chr11 | 23004038 | 23004040 | 2 | |
| Deletion | Chr12 | 24598447 | 24598449 | 2 | |
| Deletion | Chr7 | 24671930 | 24671931 | 1 | OsKitaake07g219700 |
| Deletion | Chr1 | 34853861 | 34853865 | 4 | |
| Deletion | Chr2 | 35542200 | 35542201 | 1 | |
| Deletion | Chr2 | 36942001 | 36959000 | 16999 | OsKitaake02g396000 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 13087880 | 13087883 | 2 | |
| Insertion | Chr2 | 14215230 | 14215233 | 2 | |
| Insertion | Chr10 | 13926300 | 13926303 | 2 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 11196210 | 11880533 | 2 |
| Inversion | Chr8 | 21991757 | 22026666 | |
| Inversion | Chr8 | 21991775 | 22026671 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 20623469 | Chr2 | 25288895 |