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| Mutant Information |
|---|
| Mutant Name | FN715-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN715-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 35793320 | T-C | Homo | INTERGENIC | |
| SBS | Chr2 | 5626372 | A-T | Hetero | INTRON | |
| SBS | Chr3 | 4883283 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 5515636 | C-T | Hetero | INTRON | |
| SBS | Chr3 | 7817042 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 16053466 | T-A | Homo | INTERGENIC | |
| SBS | Chr3 | 16053467 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 21969709 | T-G | Homo | INTRON | |
| SBS | Chr3 | 34436694 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 35373565 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g388000 |
| SBS | Chr4 | 14803231 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 7539357 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 7796279 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 20807810 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 7135977 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 7933759 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g101200 |
| SBS | Chr8 | 17594020 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 24327602 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 24327661 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 24327662 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 6335511 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 4332698 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 4332702 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 4332703 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 11453652 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 11134910 | A-C | Homo | INTERGENIC | |
| SBS | Chr12 | 20469045 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 27088763 | T-A | Homo | UTR_3_PRIME |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 4076227 | 4076233 | 6 | |
| Deletion | Chr3 | 5983108 | 5983121 | 13 | OsKitaake03g085700 |
| Deletion | Chr7 | 7496947 | 7496953 | 6 | |
| Deletion | Chr2 | 8184418 | 8184422 | 4 | |
| Deletion | Chr10 | 8842909 | 8842914 | 5 | |
| Deletion | Chr10 | 8912955 | 8912956 | 1 | |
| Deletion | Chr4 | 9064946 | 9064950 | 4 | |
| Deletion | Chr3 | 11177103 | 11177104 | 1 | |
| Deletion | Chr2 | 15603528 | 15603530 | 2 | |
| Deletion | Chr10 | 18074326 | 18074340 | 14 | |
| Deletion | Chr1 | 25095531 | 25095537 | 6 | |
| Deletion | Chr8 | 25920077 | 25920078 | 1 | |
| Deletion | Chr2 | 26615290 | 26615291 | 1 | OsKitaake02g266100 |
| Deletion | Chr3 | 28513001 | 28548000 | 34999 | 8 |
| Deletion | Chr6 | 29637181 | 29637189 | 8 | |
| Deletion | Chr3 | 30184790 | 30184791 | 1 | |
| Deletion | Chr3 | 34530370 | 34530372 | 2 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 32299490 | 32299493 | 2 | |
| Insertion | Chr4 | 8498224 | 8498227 | 2 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 28247539 | 28565806 | 2 |
| Inversion | Chr2 | 28565811 | 28741729 | OsKitaake02g287900 |
| Inversion | Chr2 | 36102031 | 36102320 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 11832373 | Chr2 | 26063481 |