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Mutant Information

Mutant Name	FN725-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN725-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11292030 C-T Hetero INTERGENIC
SBS Chr1 11563488 T-A Hetero INTERGENIC
SBS Chr1 40097386 A-G Hetero INTERGENIC
SBS Chr1 42759849 C-T Hetero INTERGENIC
SBS Chr2 9823765 A-G Hetero INTERGENIC
SBS Chr2 10242473 C-A Hetero INTRON
SBS Chr2 12800750 C-T Hetero INTERGENIC
SBS Chr2 28009131 A-G Hetero INTERGENIC
SBS Chr2 31387098 C-A Homo INTERGENIC
SBS Chr3 13272002 A-C Homo INTERGENIC
SBS Chr3 15943652 A-C Hetero INTRON
SBS Chr4 11376289 G-A Hetero INTERGENIC
SBS Chr5 4968385 C-T Hetero INTERGENIC
SBS Chr5 5164129 C-A Homo INTERGENIC
SBS Chr5 10535237 C-A Homo INTERGENIC
SBS Chr5 12152179 C-T Homo INTERGENIC
SBS Chr6 6296596 C-T Hetero INTERGENIC
SBS Chr6 14125637 G-A Hetero INTERGENIC
SBS Chr6 21694353 T-A Hetero INTERGENIC
SBS Chr6 25621861 A-T Hetero INTRON
SBS Chr6 28266557 T-A Hetero INTRON
SBS Chr6 28266559 T-C Hetero INTRON
SBS Chr7 13224524 A-G Hetero INTERGENIC
SBS Chr7 22216330 C-T Hetero INTERGENIC
SBS Chr8 9401287 C-T Hetero INTERGENIC
SBS Chr8 19404422 C-T Homo INTERGENIC
SBS Chr8 20205314 G-A Hetero INTERGENIC
SBS Chr9 9559496 C-T Homo NON_SYNONYMOUS_CODING OsKitaake09g058200
SBS Chr11 723288 C-T Hetero INTERGENIC
SBS Chr11 1367213 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g017400
SBS Chr11 24699945 G-A Hetero INTERGENIC
SBS Chr12 14103583 C-A Hetero UTR_3_PRIME
SBS Chr12 15962521 C-T Hetero INTERGENIC
SBS Chr12 23559980 A-G Hetero INTERGENIC
SBS Chr12 25305621 A-G Hetero INTRON

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 35430 35431 1
Deletion Chr4 638778 638779 1 OsKitaake04g005100
Deletion Chr4 2296355 2296358 3
Deletion Chr9 2934716 2934722 6
Deletion Chr3 4947039 4947040 1
Deletion Chr5 5030552 5030555 3
Deletion Chr5 5177883 5177916 33
Deletion Chr12 5576642 5576646 4
Deletion Chr4 6619589 6619594 5
Deletion Chr4 7223855 7223856 1
Deletion Chr7 7422331 7422333 2
Deletion Chr7 8301454 8301456 2
Deletion Chr9 8304090 8304094 4
Deletion Chr3 8783198 8783200 2
Deletion Chr10 15366851 15366856 5
Deletion Chr8 17945001 17958000 12999 OsKitaake08g133600
Deletion Chr5 18632084 18632092 8
Deletion Chr8 20061001 20077000 15999 OsKitaake08g147900
Deletion Chr4 23067808 23067816 8
Deletion Chr11 23980799 23980800 1
Deletion Chr3 25807400 25807402 2
Deletion Chr7 29084001 29331000 246999 47
Deletion Chr1 37466102 37466104 2

Insertions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 30602361 30602364 2
Insertion Chr3 14519147 14519150 2
Insertion Chr3 18728164 18728167 2
Insertion Chr3 35079572 35079575 2
Insertion Chr6 1442932 1442935 2
Insertion Chr6 12620554 12620557 2
Insertion Chr7 17395674 17395677 2
Insertion Chr8 3379517 3379520 2
Insertion Chr12 9643302 9643305 2
Insertion Chr9 10160983 10160987 3

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 17874235 17943423

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 4073904 Chr1 20002097 OsKitaake01g198100
Translocation Chr8 4073921 Chr1 20002891 OsKitaake01g198100
Translocation Chr10 13161247 Chr8 13883618
Translocation Chr12 16719206 Chr9 2258286
Translocation Chr12 16719277 Chr9 2258184

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11292030	C-T	Hetero	INTERGENIC
SBS	Chr1	11563488	T-A	Hetero	INTERGENIC
SBS	Chr1	40097386	A-G	Hetero	INTERGENIC
SBS	Chr1	42759849	C-T	Hetero	INTERGENIC
SBS	Chr2	9823765	A-G	Hetero	INTERGENIC
SBS	Chr2	10242473	C-A	Hetero	INTRON
SBS	Chr2	12800750	C-T	Hetero	INTERGENIC
SBS	Chr2	28009131	A-G	Hetero	INTERGENIC
SBS	Chr2	31387098	C-A	Homo	INTERGENIC
SBS	Chr3	13272002	A-C	Homo	INTERGENIC
SBS	Chr3	15943652	A-C	Hetero	INTRON
SBS	Chr4	11376289	G-A	Hetero	INTERGENIC
SBS	Chr5	4968385	C-T	Hetero	INTERGENIC
SBS	Chr5	5164129	C-A	Homo	INTERGENIC
SBS	Chr5	10535237	C-A	Homo	INTERGENIC
SBS	Chr5	12152179	C-T	Homo	INTERGENIC
SBS	Chr6	6296596	C-T	Hetero	INTERGENIC
SBS	Chr6	14125637	G-A	Hetero	INTERGENIC
SBS	Chr6	21694353	T-A	Hetero	INTERGENIC
SBS	Chr6	25621861	A-T	Hetero	INTRON
SBS	Chr6	28266557	T-A	Hetero	INTRON
SBS	Chr6	28266559	T-C	Hetero	INTRON
SBS	Chr7	13224524	A-G	Hetero	INTERGENIC
SBS	Chr7	22216330	C-T	Hetero	INTERGENIC
SBS	Chr8	9401287	C-T	Hetero	INTERGENIC
SBS	Chr8	19404422	C-T	Homo	INTERGENIC
SBS	Chr8	20205314	G-A	Hetero	INTERGENIC
SBS	Chr9	9559496	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g058200
SBS	Chr11	723288	C-T	Hetero	INTERGENIC
SBS	Chr11	1367213	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g017400
SBS	Chr11	24699945	G-A	Hetero	INTERGENIC
SBS	Chr12	14103583	C-A	Hetero	UTR_3_PRIME
SBS	Chr12	15962521	C-T	Hetero	INTERGENIC
SBS	Chr12	23559980	A-G	Hetero	INTERGENIC
SBS	Chr12	25305621	A-G	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	35430	35431	1
Deletion	Chr4	638778	638779	1	OsKitaake04g005100
Deletion	Chr4	2296355	2296358	3
Deletion	Chr9	2934716	2934722	6
Deletion	Chr3	4947039	4947040	1
Deletion	Chr5	5030552	5030555	3
Deletion	Chr5	5177883	5177916	33
Deletion	Chr12	5576642	5576646	4
Deletion	Chr4	6619589	6619594	5
Deletion	Chr4	7223855	7223856	1
Deletion	Chr7	7422331	7422333	2
Deletion	Chr7	8301454	8301456	2
Deletion	Chr9	8304090	8304094	4
Deletion	Chr3	8783198	8783200	2
Deletion	Chr10	15366851	15366856	5
Deletion	Chr8	17945001	17958000	12999	OsKitaake08g133600
Deletion	Chr5	18632084	18632092	8
Deletion	Chr8	20061001	20077000	15999	OsKitaake08g147900
Deletion	Chr4	23067808	23067816	8
Deletion	Chr11	23980799	23980800	1
Deletion	Chr3	25807400	25807402	2
Deletion	Chr7	29084001	29331000	246999	47
Deletion	Chr1	37466102	37466104	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	17874235	17943423

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes