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Mutant Information

Mutant Name	FN731-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN731-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 30277446 G-A Hetero INTERGENIC
SBS Chr2 20276811 T-A Homo INTRON
SBS Chr2 20276812 T-A Homo INTRON
SBS Chr2 20276814 G-A Homo INTRON
SBS Chr2 20277257 A-T Homo INTRON
SBS Chr3 2378223 C-T Hetero INTERGENIC
SBS Chr3 4677807 G-A Hetero INTRON
SBS Chr3 27847540 T-G Hetero INTERGENIC
SBS Chr3 29260390 A-G Hetero INTRON
SBS Chr3 32236349 T-A Hetero INTERGENIC
SBS Chr4 2957784 G-A Hetero INTERGENIC
SBS Chr4 14716936 C-T Hetero INTERGENIC
SBS Chr4 27702897 G-A Hetero INTERGENIC
SBS Chr4 29227729 G-T Hetero INTERGENIC
SBS Chr4 34987718 G-A Hetero INTERGENIC
SBS Chr5 12679178 G-A Homo INTERGENIC
SBS Chr6 8401242 C-T Homo INTERGENIC
SBS Chr6 14912305 G-A Homo INTERGENIC
SBS Chr6 17287692 T-A Homo INTRON
SBS Chr6 18776249 C-T Homo INTRON
SBS Chr6 26371520 C-T Hetero INTRON
SBS Chr6 26447665 T-C Hetero INTERGENIC
SBS Chr7 18954780 A-C Hetero INTERGENIC
SBS Chr8 1427776 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake08g017700
SBS Chr8 5257743 G-A Homo INTERGENIC
SBS Chr8 13174408 A-T Homo INTERGENIC
SBS Chr8 14768808 T-C Homo INTERGENIC
SBS Chr9 22569081 A-T Hetero UTR_3_PRIME
SBS Chr10 3248946 C-T Homo INTERGENIC
SBS Chr10 15867511 C-A Homo INTERGENIC
SBS Chr11 8158416 T-A Homo INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 3466875 3466881 6
Deletion Chr10 10338590 10338712 122
Deletion Chr8 10996482 10996490 8
Deletion Chr6 11501112 11501114 2
Deletion Chr3 16100140 16100142 2
Deletion Chr12 17772001 17779000 6999 OsKitaake12g130800
Deletion Chr5 19061630 19061632 2
Deletion Chr9 21206492 21206494 2
Deletion Chr11 21493285 21493288 3
Deletion Chr12 22680001 22733000 52999 9
Deletion Chr12 22774832 22774915 83
Deletion Chr5 26121298 26121299 1
Deletion Chr4 27511648 27511649 1
Deletion Chr3 35552666 35552667 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 27533966 27533969 2
Insertion Chr11 16647862 16647865 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 473180 Chr1 25809394 OsKitaake08g007000
Translocation Chr11 6697375 Chr1 25809396

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	30277446	G-A	Hetero	INTERGENIC
SBS	Chr2	20276811	T-A	Homo	INTRON
SBS	Chr2	20276812	T-A	Homo	INTRON
SBS	Chr2	20276814	G-A	Homo	INTRON
SBS	Chr2	20277257	A-T	Homo	INTRON
SBS	Chr3	2378223	C-T	Hetero	INTERGENIC
SBS	Chr3	4677807	G-A	Hetero	INTRON
SBS	Chr3	27847540	T-G	Hetero	INTERGENIC
SBS	Chr3	29260390	A-G	Hetero	INTRON
SBS	Chr3	32236349	T-A	Hetero	INTERGENIC
SBS	Chr4	2957784	G-A	Hetero	INTERGENIC
SBS	Chr4	14716936	C-T	Hetero	INTERGENIC
SBS	Chr4	27702897	G-A	Hetero	INTERGENIC
SBS	Chr4	29227729	G-T	Hetero	INTERGENIC
SBS	Chr4	34987718	G-A	Hetero	INTERGENIC
SBS	Chr5	12679178	G-A	Homo	INTERGENIC
SBS	Chr6	8401242	C-T	Homo	INTERGENIC
SBS	Chr6	14912305	G-A	Homo	INTERGENIC
SBS	Chr6	17287692	T-A	Homo	INTRON
SBS	Chr6	18776249	C-T	Homo	INTRON
SBS	Chr6	26371520	C-T	Hetero	INTRON
SBS	Chr6	26447665	T-C	Hetero	INTERGENIC
SBS	Chr7	18954780	A-C	Hetero	INTERGENIC
SBS	Chr8	1427776	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g017700
SBS	Chr8	5257743	G-A	Homo	INTERGENIC
SBS	Chr8	13174408	A-T	Homo	INTERGENIC
SBS	Chr8	14768808	T-C	Homo	INTERGENIC
SBS	Chr9	22569081	A-T	Hetero	UTR_3_PRIME
SBS	Chr10	3248946	C-T	Homo	INTERGENIC
SBS	Chr10	15867511	C-A	Homo	INTERGENIC
SBS	Chr11	8158416	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	3466875	3466881	6
Deletion	Chr10	10338590	10338712	122
Deletion	Chr8	10996482	10996490	8
Deletion	Chr6	11501112	11501114	2
Deletion	Chr3	16100140	16100142	2
Deletion	Chr12	17772001	17779000	6999	OsKitaake12g130800
Deletion	Chr5	19061630	19061632	2
Deletion	Chr9	21206492	21206494	2
Deletion	Chr11	21493285	21493288	3
Deletion	Chr12	22680001	22733000	52999	9
Deletion	Chr12	22774832	22774915	83
Deletion	Chr5	26121298	26121299	1
Deletion	Chr4	27511648	27511649	1
Deletion	Chr3	35552666	35552667	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	473180	Chr1	25809394	OsKitaake08g007000
Translocation	Chr11	6697375	Chr1	25809396

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes