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Mutant Information

Mutant Name	FN734-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN734-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2358886 G-A Homo INTERGENIC
SBS Chr1 13316292 T-C Homo INTERGENIC
SBS Chr1 29637746 A-G Hetero INTERGENIC
SBS Chr1 31763984 A-T Hetero INTERGENIC
SBS Chr1 32572518 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g330300
SBS Chr1 33306015 T-C Hetero INTERGENIC
SBS Chr1 41145672 T-C Hetero INTRON
SBS Chr2 11229401 C-T Hetero INTERGENIC
SBS Chr2 13138104 G-A Hetero INTERGENIC
SBS Chr2 13263965 C-T Hetero INTERGENIC
SBS Chr2 18798004 G-A Hetero INTERGENIC
SBS Chr2 35556347 G-A Hetero INTERGENIC
SBS Chr3 3459875 C-A Hetero INTERGENIC
SBS Chr3 4431129 T-C Hetero INTERGENIC
SBS Chr3 26004857 C-T Hetero INTERGENIC
SBS Chr3 26924215 C-T Hetero INTERGENIC
SBS Chr3 29422786 C-T Hetero INTERGENIC
SBS Chr3 30493339 C-T Hetero INTERGENIC
SBS Chr3 30521862 C-T Hetero INTERGENIC
SBS Chr3 37563898 G-A Homo UTR_5_PRIME
SBS Chr4 30495703 A-C Hetero INTERGENIC
SBS Chr5 11364440 C-G Homo INTERGENIC
SBS Chr5 17086984 A-C Homo INTRON
SBS Chr5 21462227 A-G Homo INTRON
SBS Chr6 13160290 C-T Hetero INTERGENIC
SBS Chr6 16295871 G-C Hetero INTERGENIC
SBS Chr6 25926269 C-T Hetero INTERGENIC
SBS Chr7 4997111 C-T Hetero INTERGENIC
SBS Chr7 26646226 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g247400
SBS Chr7 28741534 A-G Hetero INTERGENIC
SBS Chr8 9479325 A-T Homo INTERGENIC
SBS Chr8 27820790 T-A Hetero UTR_5_PRIME
SBS Chr8 27820792 T-A Hetero UTR_5_PRIME
SBS Chr11 25432626 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g204900
SBS Chr11 26617821 G-A Hetero INTERGENIC
SBS Chr12 4464137 A-T Homo INTERGENIC
SBS Chr12 7392058 G-A Hetero INTERGENIC
SBS Chr12 14738087 C-T Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 1833859 1833860 1
Deletion Chr2 7184821 7184823 2
Deletion Chr3 7578001 7599000 20999 OsKitaake03g105200
Deletion Chr4 8427142 8427147 5
Deletion Chr7 11603203 11603209 6
Deletion Chr12 11719649 11719804 155
Deletion Chr12 15184513 15184516 3
Deletion Chr5 16364431 16364432 1
Deletion Chr5 17076451 17076460 9
Deletion Chr12 24610157 24610159 2
Deletion Chr7 25546201 25546202 1
Deletion Chr4 27982001 28013000 30999 4
Deletion Chr4 28286001 28343000 56999 8
Deletion Chr4 28459001 28488000 28999 7
Deletion Chr1 43366000 43366001 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 13813908 13813911 2
Insertion Chr12 26049535 26049537 1

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 2133276 Chr8 26035225
Translocation Chr9 2133287 Chr8 26035627
Translocation Chr8 26035217 Chr6 12863400
Translocation Chr4 28486950 Chr3 12544700 OsKitaake03g169400
Translocation Chr4 28487313 Chr3 12544703 OsKitaake03g169400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2358886	G-A	Homo	INTERGENIC
SBS	Chr1	13316292	T-C	Homo	INTERGENIC
SBS	Chr1	29637746	A-G	Hetero	INTERGENIC
SBS	Chr1	31763984	A-T	Hetero	INTERGENIC
SBS	Chr1	32572518	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g330300
SBS	Chr1	33306015	T-C	Hetero	INTERGENIC
SBS	Chr1	41145672	T-C	Hetero	INTRON
SBS	Chr2	11229401	C-T	Hetero	INTERGENIC
SBS	Chr2	13138104	G-A	Hetero	INTERGENIC
SBS	Chr2	13263965	C-T	Hetero	INTERGENIC
SBS	Chr2	18798004	G-A	Hetero	INTERGENIC
SBS	Chr2	35556347	G-A	Hetero	INTERGENIC
SBS	Chr3	3459875	C-A	Hetero	INTERGENIC
SBS	Chr3	4431129	T-C	Hetero	INTERGENIC
SBS	Chr3	26004857	C-T	Hetero	INTERGENIC
SBS	Chr3	26924215	C-T	Hetero	INTERGENIC
SBS	Chr3	29422786	C-T	Hetero	INTERGENIC
SBS	Chr3	30493339	C-T	Hetero	INTERGENIC
SBS	Chr3	30521862	C-T	Hetero	INTERGENIC
SBS	Chr3	37563898	G-A	Homo	UTR_5_PRIME
SBS	Chr4	30495703	A-C	Hetero	INTERGENIC
SBS	Chr5	11364440	C-G	Homo	INTERGENIC
SBS	Chr5	17086984	A-C	Homo	INTRON
SBS	Chr5	21462227	A-G	Homo	INTRON
SBS	Chr6	13160290	C-T	Hetero	INTERGENIC
SBS	Chr6	16295871	G-C	Hetero	INTERGENIC
SBS	Chr6	25926269	C-T	Hetero	INTERGENIC
SBS	Chr7	4997111	C-T	Hetero	INTERGENIC
SBS	Chr7	26646226	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g247400
SBS	Chr7	28741534	A-G	Hetero	INTERGENIC
SBS	Chr8	9479325	A-T	Homo	INTERGENIC
SBS	Chr8	27820790	T-A	Hetero	UTR_5_PRIME
SBS	Chr8	27820792	T-A	Hetero	UTR_5_PRIME
SBS	Chr11	25432626	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g204900
SBS	Chr11	26617821	G-A	Hetero	INTERGENIC
SBS	Chr12	4464137	A-T	Homo	INTERGENIC
SBS	Chr12	7392058	G-A	Hetero	INTERGENIC
SBS	Chr12	14738087	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	1833859	1833860	1
Deletion	Chr2	7184821	7184823	2
Deletion	Chr3	7578001	7599000	20999	OsKitaake03g105200
Deletion	Chr4	8427142	8427147	5
Deletion	Chr7	11603203	11603209	6
Deletion	Chr12	11719649	11719804	155
Deletion	Chr12	15184513	15184516	3
Deletion	Chr5	16364431	16364432	1
Deletion	Chr5	17076451	17076460	9
Deletion	Chr12	24610157	24610159	2
Deletion	Chr7	25546201	25546202	1
Deletion	Chr4	27982001	28013000	30999	4
Deletion	Chr4	28286001	28343000	56999	8
Deletion	Chr4	28459001	28488000	28999	7
Deletion	Chr1	43366000	43366001	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	2133276	Chr8	26035225
Translocation	Chr9	2133287	Chr8	26035627
Translocation	Chr8	26035217	Chr6	12863400
Translocation	Chr4	28486950	Chr3	12544700	OsKitaake03g169400
Translocation	Chr4	28487313	Chr3	12544703	OsKitaake03g169400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes