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Mutant Information

Mutant Name	FN740-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN740-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11167242 C-T Homo INTRON
SBS Chr1 25047560 A-G Homo INTERGENIC
SBS Chr2 5594922 A-T Homo UTR_3_PRIME
SBS Chr2 14747241 A-G Homo INTERGENIC
SBS Chr2 32104192 G-A Homo INTERGENIC
SBS Chr2 35505042 C-T Homo INTERGENIC
SBS Chr3 777623 G-A Hetero STOP_GAINED OsKitaake03g012200
SBS Chr3 33195269 G-A Hetero INTERGENIC
SBS Chr3 34319790 G-T Hetero INTERGENIC
SBS Chr3 35148032 C-T Hetero INTERGENIC
SBS Chr5 11991635 A-G Hetero INTERGENIC
SBS Chr5 22993251 C-T Homo INTERGENIC
SBS Chr5 28739886 A-G Homo START_LOST OsKitaake05g269800
SBS Chr6 6871586 T-C Hetero INTRON
SBS Chr6 7039872 C-T Hetero INTERGENIC
SBS Chr6 18245339 C-T Hetero INTERGENIC
SBS Chr6 27554329 G-A Hetero INTRON
SBS Chr7 4749191 G-T Hetero INTERGENIC
SBS Chr8 6587174 C-T Hetero INTERGENIC
SBS Chr9 20647937 G-A Hetero INTERGENIC
SBS Chr11 2564466 T-C Homo INTRON
SBS Chr11 5922727 C-T Homo INTRON
SBS Chr11 6433685 A-G Homo INTERGENIC
SBS Chr11 8966386 C-G Hetero INTERGENIC
SBS Chr11 24379541 G-A Hetero INTERGENIC
SBS Chr11 26354429 T-C Hetero INTERGENIC
SBS Chr11 26354431 G-A Hetero INTERGENIC
SBS Chr12 6390563 T-A Hetero INTRON
SBS Chr12 10646317 C-G Hetero INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 4596689 4596690 1
Deletion Chr1 11139264 11139266 2
Deletion Chr10 14678413 14678415 2
Deletion Chr1 19344808 19344810 2
Deletion Chr4 22673736 22673745 9
Deletion Chr8 25652671 25652673 2
Deletion Chr2 26222141 26222142 1

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 15001257 15001260 2
Insertion Chr7 20138997 20139000 2
Insertion Chr10 22441762 22441765 2
Insertion Chr2 25139969 25139971 1
Insertion Chr3 8671974 8671978 3

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 21352756 21711437 OsKitaake06g191400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11167242	C-T	Homo	INTRON
SBS	Chr1	25047560	A-G	Homo	INTERGENIC
SBS	Chr2	5594922	A-T	Homo	UTR_3_PRIME
SBS	Chr2	14747241	A-G	Homo	INTERGENIC
SBS	Chr2	32104192	G-A	Homo	INTERGENIC
SBS	Chr2	35505042	C-T	Homo	INTERGENIC
SBS	Chr3	777623	G-A	Hetero	STOP_GAINED	OsKitaake03g012200
SBS	Chr3	33195269	G-A	Hetero	INTERGENIC
SBS	Chr3	34319790	G-T	Hetero	INTERGENIC
SBS	Chr3	35148032	C-T	Hetero	INTERGENIC
SBS	Chr5	11991635	A-G	Hetero	INTERGENIC
SBS	Chr5	22993251	C-T	Homo	INTERGENIC
SBS	Chr5	28739886	A-G	Homo	START_LOST	OsKitaake05g269800
SBS	Chr6	6871586	T-C	Hetero	INTRON
SBS	Chr6	7039872	C-T	Hetero	INTERGENIC
SBS	Chr6	18245339	C-T	Hetero	INTERGENIC
SBS	Chr6	27554329	G-A	Hetero	INTRON
SBS	Chr7	4749191	G-T	Hetero	INTERGENIC
SBS	Chr8	6587174	C-T	Hetero	INTERGENIC
SBS	Chr9	20647937	G-A	Hetero	INTERGENIC
SBS	Chr11	2564466	T-C	Homo	INTRON
SBS	Chr11	5922727	C-T	Homo	INTRON
SBS	Chr11	6433685	A-G	Homo	INTERGENIC
SBS	Chr11	8966386	C-G	Hetero	INTERGENIC
SBS	Chr11	24379541	G-A	Hetero	INTERGENIC
SBS	Chr11	26354429	T-C	Hetero	INTERGENIC
SBS	Chr11	26354431	G-A	Hetero	INTERGENIC
SBS	Chr12	6390563	T-A	Hetero	INTRON
SBS	Chr12	10646317	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	4596689	4596690	1
Deletion	Chr1	11139264	11139266	2
Deletion	Chr10	14678413	14678415	2
Deletion	Chr1	19344808	19344810	2
Deletion	Chr4	22673736	22673745	9
Deletion	Chr8	25652671	25652673	2
Deletion	Chr2	26222141	26222142	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	21352756	21711437	OsKitaake06g191400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes