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| Mutant Information |
|---|
| Mutant Name | FN744-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN744-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 24
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 9471083 | A-G | Homo | UTR_3_PRIME | |
| SBS | Chr1 | 14703790 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 26171919 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 12180115 | C-A | Homo | INTERGENIC | |
| SBS | Chr2 | 17032598 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 36074050 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 2670604 | A-G | Homo | INTERGENIC | |
| SBS | Chr6 | 4155700 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 11217526 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 17747065 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 17839221 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 19461420 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 19461422 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 24535578 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 31027204 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 7552484 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 2057217 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 5871427 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 20983235 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 20182144 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 16461923 | G-C | Hetero | START_GAINED | |
| SBS | Chr12 | 1336408 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 15749157 | T-G | Homo | INTERGENIC | |
| SBS | Chr12 | 18823289 | A-T | Homo | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 10036243 | 10036254 | 11 | |
| Deletion | Chr10 | 10203767 | 10203877 | 110 | |
| Deletion | Chr5 | 11387809 | 11387810 | 1 | |
| Deletion | Chr2 | 13691358 | 13691360 | 2 | |
| Deletion | Chr12 | 14882895 | 14882899 | 4 | |
| Deletion | Chr4 | 21254729 | 21254736 | 7 | |
| Deletion | Chr9 | 22513411 | 22513418 | 7 | |
| Deletion | Chr12 | 23194001 | 23272000 | 77999 | 8 |
| Deletion | Chr2 | 23432740 | 23432808 | 68 | |
| Deletion | Chr3 | 27484333 | 27484334 | 1 | OsKitaake03g283700 |
| Deletion | Chr5 | 27767776 | 27767783 | 7 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 23455247 | 23455250 | 2 | |
| Insertion | Chr5 | 351770 | 351773 | 2 | |
| Insertion | Chr8 | 4831893 | 4831897 | 3 | |
| Insertion | Chr9 | 17112663 | 17112666 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 22406368 | 22832042 | OsKitaake12g180400 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 9864267 | Chr3 | 37626005 | |
| Translocation | Chr7 | 12828201 | Chr6 | 18872553 | |
| Translocation | Chr6 | 20103988 | Chr2 | 24924971 |