Search Kitaake

Mutant Information

Mutant Name	FN753-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN753-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5848399 G-A Hetero INTERGENIC
SBS Chr1 18265988 G-C Hetero INTERGENIC
SBS Chr1 19569156 A-T Hetero INTERGENIC
SBS Chr1 35067189 G-A Homo INTERGENIC
SBS Chr1 41671273 G-T Homo INTRON
SBS Chr2 2325826 C-T Hetero INTERGENIC
SBS Chr2 14335335 A-G Hetero INTERGENIC
SBS Chr2 17448507 C-A Hetero INTRON
SBS Chr2 29543194 T-A Homo INTERGENIC
SBS Chr2 32251741 T-A Homo INTERGENIC
SBS Chr2 35762616 C-T Homo INTERGENIC
SBS Chr3 18191119 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g221900
SBS Chr3 18451154 A-G Hetero SYNONYMOUS_CODING
SBS Chr3 20432067 T-G Hetero INTERGENIC
SBS Chr4 19154413 C-T Hetero INTERGENIC
SBS Chr4 26090587 C-A Hetero INTERGENIC
SBS Chr4 26634164 T-G Hetero UTR_3_PRIME
SBS Chr5 7129812 T-C Hetero INTERGENIC
SBS Chr7 2883520 T-C Homo INTERGENIC
SBS Chr7 27585481 T-A Homo INTRON
SBS Chr8 3641064 T-A Homo INTERGENIC
SBS Chr8 5141009 C-T Homo INTERGENIC
SBS Chr8 26212428 A-T Homo INTRON
SBS Chr9 16549842 A-G Homo INTERGENIC
SBS Chr10 8393617 C-T Homo INTERGENIC
SBS Chr10 14580831 G-A Homo UTR_3_PRIME
SBS Chr11 9915483 C-T Homo INTERGENIC
SBS Chr11 26463303 G-C Hetero INTERGENIC
SBS Chr11 27666767 G-A Homo INTERGENIC
SBS Chr12 6068128 G-A Hetero INTRON
SBS Chr12 22136150 T-G Hetero INTRON

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 774697 774707 10
Deletion Chr11 4972505 4972632 127
Deletion Chr10 6453463 6453464 1
Deletion Chr1 10349250 10349377 127
Deletion Chr11 10697775 10697864 89
Deletion Chr4 10825158 10825166 8
Deletion Chr1 11352445 11352569 124
Deletion Chr5 16307085 16307282 197
Deletion Chr2 19020142 19020220 78
Deletion Chr3 20035146 20035300 154
Deletion Chr8 22197986 22197990 4
Deletion Chr8 27884001 27898000 13999 OsKitaake08g233400
Deletion Chr1 31482133 31482211 78 OsKitaake01g316000
Deletion Chr4 32664001 32695000 30999 6
Deletion Chr1 35942159 35942162 3
Deletion Chr1 39633705 39633711 6

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 36350492 36350497 4
Insertion Chr3 27045845 27045847 1
Insertion Chr4 18345247 18345250 2
Insertion Chr8 22823116 22823118 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 27287268 27883801 OsKitaake08g224400
Inversion Chr4 32663330 33479623 2
Inversion Chr4 32694404 33479633 OsKitaake04g275400

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 25685745 Chr7 26700409
Translocation Chr8 25685863 Chr7 26700598

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5848399	G-A	Hetero	INTERGENIC
SBS	Chr1	18265988	G-C	Hetero	INTERGENIC
SBS	Chr1	19569156	A-T	Hetero	INTERGENIC
SBS	Chr1	35067189	G-A	Homo	INTERGENIC
SBS	Chr1	41671273	G-T	Homo	INTRON
SBS	Chr2	2325826	C-T	Hetero	INTERGENIC
SBS	Chr2	14335335	A-G	Hetero	INTERGENIC
SBS	Chr2	17448507	C-A	Hetero	INTRON
SBS	Chr2	29543194	T-A	Homo	INTERGENIC
SBS	Chr2	32251741	T-A	Homo	INTERGENIC
SBS	Chr2	35762616	C-T	Homo	INTERGENIC
SBS	Chr3	18191119	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g221900
SBS	Chr3	18451154	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr3	20432067	T-G	Hetero	INTERGENIC
SBS	Chr4	19154413	C-T	Hetero	INTERGENIC
SBS	Chr4	26090587	C-A	Hetero	INTERGENIC
SBS	Chr4	26634164	T-G	Hetero	UTR_3_PRIME
SBS	Chr5	7129812	T-C	Hetero	INTERGENIC
SBS	Chr7	2883520	T-C	Homo	INTERGENIC
SBS	Chr7	27585481	T-A	Homo	INTRON
SBS	Chr8	3641064	T-A	Homo	INTERGENIC
SBS	Chr8	5141009	C-T	Homo	INTERGENIC
SBS	Chr8	26212428	A-T	Homo	INTRON
SBS	Chr9	16549842	A-G	Homo	INTERGENIC
SBS	Chr10	8393617	C-T	Homo	INTERGENIC
SBS	Chr10	14580831	G-A	Homo	UTR_3_PRIME
SBS	Chr11	9915483	C-T	Homo	INTERGENIC
SBS	Chr11	26463303	G-C	Hetero	INTERGENIC
SBS	Chr11	27666767	G-A	Homo	INTERGENIC
SBS	Chr12	6068128	G-A	Hetero	INTRON
SBS	Chr12	22136150	T-G	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	774697	774707	10
Deletion	Chr11	4972505	4972632	127
Deletion	Chr10	6453463	6453464	1
Deletion	Chr1	10349250	10349377	127
Deletion	Chr11	10697775	10697864	89
Deletion	Chr4	10825158	10825166	8
Deletion	Chr1	11352445	11352569	124
Deletion	Chr5	16307085	16307282	197
Deletion	Chr2	19020142	19020220	78
Deletion	Chr3	20035146	20035300	154
Deletion	Chr8	22197986	22197990	4
Deletion	Chr8	27884001	27898000	13999	OsKitaake08g233400
Deletion	Chr1	31482133	31482211	78	OsKitaake01g316000
Deletion	Chr4	32664001	32695000	30999	6
Deletion	Chr1	35942159	35942162	3
Deletion	Chr1	39633705	39633711	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	27287268	27883801	OsKitaake08g224400
Inversion	Chr4	32663330	33479623	2
Inversion	Chr4	32694404	33479633	OsKitaake04g275400

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes