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Mutant Information

Mutant Name	FN754-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN754-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 25629693 C-T Homo INTERGENIC
SBS Chr2 7344994 C-G Hetero INTERGENIC
SBS Chr2 9512263 G-A Hetero UTR_3_PRIME
SBS Chr2 30848230 G-T Hetero INTERGENIC
SBS Chr2 32327707 A-G Hetero INTERGENIC
SBS Chr3 15562268 C-T Homo INTERGENIC
SBS Chr3 20106846 G-A Homo INTERGENIC
SBS Chr4 29001774 G-A Hetero INTERGENIC
SBS Chr5 8655788 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g082400
SBS Chr5 9200655 C-T Homo INTERGENIC
SBS Chr5 20738722 T-A Hetero INTERGENIC
SBS Chr6 20818709 G-A Homo INTERGENIC
SBS Chr7 6309047 C-G Hetero INTERGENIC
SBS Chr7 17848858 A-G Hetero INTERGENIC
SBS Chr7 26718303 G-A Hetero INTERGENIC
SBS Chr7 27823629 G-T Hetero INTERGENIC
SBS Chr8 5811516 G-A Homo INTERGENIC
SBS Chr8 11135814 G-A Hetero INTERGENIC
SBS Chr10 14221196 G-A Hetero INTERGENIC
SBS Chr10 23733870 G-T Homo INTERGENIC
SBS Chr11 15375028 A-T Hetero INTERGENIC
SBS Chr11 16183370 C-T Hetero INTERGENIC
SBS Chr11 16956471 C-A Hetero INTERGENIC
SBS Chr11 17589172 G-A Hetero INTERGENIC
SBS Chr11 18740412 T-A Homo SYNONYMOUS_CODING
SBS Chr11 24259908 C-A Hetero INTERGENIC
SBS Chr12 11968219 T-A Hetero INTRON
SBS Chr12 16514303 C-A Hetero INTERGENIC
SBS Chr12 22524064 T-A Hetero INTERGENIC
SBS Chr12 27055543 G-A Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 481402 481557 155
Deletion Chr9 2429329 2429331 2
Deletion Chr11 2752620 2752834 214
Deletion Chr10 3618492 3618493 1
Deletion Chr8 5255130 5255132 2
Deletion Chr10 9424337 9424340 3
Deletion Chr3 10751952 10752207 255
Deletion Chr2 14394644 14394645 1
Deletion Chr11 14425209 14425522 313
Deletion Chr3 15319823 15319824 1 OsKitaake03g198500
Deletion Chr3 16652864 16652955 91
Deletion Chr12 17278341 17278343 2 OsKitaake12g127200
Deletion Chr7 17501331 17501408 77
Deletion Chr4 18709868 18709869 1
Deletion Chr12 23310547 23310632 85
Deletion Chr5 30223346 30223347 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr10 23399614 23399617 2
Insertion Chr3 4089589 4089591 1
Insertion Chr6 24954 24957 2
Insertion Chr8 22826309 22826311 1
Insertion Chr9 2754472 2754474 1
Insertion Chr11 18736078 18736082 3

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 17035470 17143704
Inversion Chr3 17104099 17143699 OsKitaake03g212500
Inversion Chr7 25501421 26129559 OsKitaake07g239400
Inversion Chr7 25501454 26129578 OsKitaake07g239400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25629693	C-T	Homo	INTERGENIC
SBS	Chr2	7344994	C-G	Hetero	INTERGENIC
SBS	Chr2	9512263	G-A	Hetero	UTR_3_PRIME
SBS	Chr2	30848230	G-T	Hetero	INTERGENIC
SBS	Chr2	32327707	A-G	Hetero	INTERGENIC
SBS	Chr3	15562268	C-T	Homo	INTERGENIC
SBS	Chr3	20106846	G-A	Homo	INTERGENIC
SBS	Chr4	29001774	G-A	Hetero	INTERGENIC
SBS	Chr5	8655788	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g082400
SBS	Chr5	9200655	C-T	Homo	INTERGENIC
SBS	Chr5	20738722	T-A	Hetero	INTERGENIC
SBS	Chr6	20818709	G-A	Homo	INTERGENIC
SBS	Chr7	6309047	C-G	Hetero	INTERGENIC
SBS	Chr7	17848858	A-G	Hetero	INTERGENIC
SBS	Chr7	26718303	G-A	Hetero	INTERGENIC
SBS	Chr7	27823629	G-T	Hetero	INTERGENIC
SBS	Chr8	5811516	G-A	Homo	INTERGENIC
SBS	Chr8	11135814	G-A	Hetero	INTERGENIC
SBS	Chr10	14221196	G-A	Hetero	INTERGENIC
SBS	Chr10	23733870	G-T	Homo	INTERGENIC
SBS	Chr11	15375028	A-T	Hetero	INTERGENIC
SBS	Chr11	16183370	C-T	Hetero	INTERGENIC
SBS	Chr11	16956471	C-A	Hetero	INTERGENIC
SBS	Chr11	17589172	G-A	Hetero	INTERGENIC
SBS	Chr11	18740412	T-A	Homo	SYNONYMOUS_CODING
SBS	Chr11	24259908	C-A	Hetero	INTERGENIC
SBS	Chr12	11968219	T-A	Hetero	INTRON
SBS	Chr12	16514303	C-A	Hetero	INTERGENIC
SBS	Chr12	22524064	T-A	Hetero	INTERGENIC
SBS	Chr12	27055543	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	481402	481557	155
Deletion	Chr9	2429329	2429331	2
Deletion	Chr11	2752620	2752834	214
Deletion	Chr10	3618492	3618493	1
Deletion	Chr8	5255130	5255132	2
Deletion	Chr10	9424337	9424340	3
Deletion	Chr3	10751952	10752207	255
Deletion	Chr2	14394644	14394645	1
Deletion	Chr11	14425209	14425522	313
Deletion	Chr3	15319823	15319824	1	OsKitaake03g198500
Deletion	Chr3	16652864	16652955	91
Deletion	Chr12	17278341	17278343	2	OsKitaake12g127200
Deletion	Chr7	17501331	17501408	77
Deletion	Chr4	18709868	18709869	1
Deletion	Chr12	23310547	23310632	85
Deletion	Chr5	30223346	30223347	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	17035470	17143704
Inversion	Chr3	17104099	17143699	OsKitaake03g212500
Inversion	Chr7	25501421	26129559	OsKitaake07g239400
Inversion	Chr7	25501454	26129578	OsKitaake07g239400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes